Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_N04
         (244 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0990 - 29955207-29955551,29955639-29955813,29955887-299560...    27   2.1  

>04_04_0990 -
           29955207-29955551,29955639-29955813,29955887-29956017,
           29956317-29956436,29956908-29956984,29957070-29957316,
           29957413-29957569,29958191-29958309,29958421-29958555,
           29958636-29958921,29959009-29959211,29959732-29959881,
           29960084-29960266,29960931-29961278
          Length = 891

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
 Frame = +3

Query: 93  CSYKYXXMINKILLRGYARGIYS-----MQHC--TQIEDDRAKRTSYADSECQNT 236
           C +K   ++  ++L+G+ RGI+S     ++ C  T   D   K  + AD  C  T
Sbjct: 532 CIWKLPNLVPSVVLKGHKRGIWSVEFSPVEQCVITSSGDRTVKIWAVADGSCLKT 586


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,633,349
Number of Sequences: 37544
Number of extensions: 82021
Number of successful extensions: 140
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 14,793,348
effective HSP length: 59
effective length of database: 12,578,252
effective search space used: 264143292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)