Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_N04
         (244 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084197-27|AAG23467.2|  314|Caenorhabditis elegans Hypothetical...    26   4.1  
U80032-1|AAB53879.2|  568|Caenorhabditis elegans Phosphodiestera...    25   7.1  
Z81122-5|CAB03357.1|  579|Caenorhabditis elegans Hypothetical pr...    25   9.4  

>AC084197-27|AAG23467.2|  314|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.21 protein.
          Length = 314

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 9/30 (30%), Positives = 21/30 (70%)
 Frame = +1

Query: 136 EDMLEAFIRCNIVLKSKTTGPNGPHMRIQS 225
           E++++ F R ++VLK+K    +  H+R+++
Sbjct: 175 ENLVDQFCRSHLVLKAKVIRDSPTHIRVRN 204


>U80032-1|AAB53879.2|  568|Caenorhabditis elegans Phosphodiesterase
           protein 5 protein.
          Length = 568

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 92  LAQFKCCILIGQINFKFSERSYINIILD 9
           L+  K CIL   +   FS ++ +N+ILD
Sbjct: 441 LSLIKHCILATDLALFFSNKAKLNVILD 468


>Z81122-5|CAB03357.1|  579|Caenorhabditis elegans Hypothetical
           protein T13F2.6 protein.
          Length = 579

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +3

Query: 159 SMQHCTQIEDDRAKRTSYADSECQNTC 239
           S  HC +  +   +R  +  S+C NTC
Sbjct: 238 SGSHCCESIESGHRRPHHHQSKCMNTC 264


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,284,788
Number of Sequences: 27780
Number of extensions: 86049
Number of successful extensions: 222
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 12,740,198
effective HSP length: 60
effective length of database: 11,073,398
effective search space used: 221467960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)