Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_N03
         (350 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   1.4  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   1.4  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          21   5.6  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   5.6  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   5.6  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    20   7.4  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    20   7.4  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    20   7.4  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    20   7.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   9.8  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +2

Query: 143 VEKSLRDAKMDK--AQIHDIVLVGGSTRIPKVQKLLQDFFNGKE 268
           +E+ LR A  +K   +I   ++  G    PK+  + + +  GK+
Sbjct: 614 LERELRKAHQEKDSPRIQTYIMALGMIGEPKILSVFEPYLEGKQ 657


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +2

Query: 188 HDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDE 295
           +D ++VGG      V   L +  N K L     PDE
Sbjct: 69  YDFIVVGGGAARAVVAGRLSEVSNWKVLLLEAGPDE 104


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = +3

Query: 117 ICSDLQWSPSKSPSAMRRWTRPR 185
           I  D +W    +    R W+RPR
Sbjct: 29  ITGDEKWVVYNNIKRKRSWSRPR 51


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = +3

Query: 117 ICSDLQWSPSKSPSAMRRWTRPR 185
           I  D +W    +    R W+RPR
Sbjct: 150 ITGDEKWVVYNNIKRKRSWSRPR 172


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +3

Query: 138 SPSKSPSAMRRWTRPRFTTSYSWAGPLAFLKCRSS 242
           SP+ SPS   +       T+ S  G    L+C +S
Sbjct: 740 SPNASPSPAEQCASTTTITARSPQGSQGLLQCATS 774


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 11  TLSSSTQASIEIDSLFEGIDFY 76
           TL SST A++   S  + ID Y
Sbjct: 265 TLMSSTNAALPKISYVKSIDVY 286


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 11  TLSSSTQASIEIDSLFEGIDFY 76
           TL SST A++   S  + ID Y
Sbjct: 265 TLMSSTNAALPKISYVKSIDVY 286


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 7/14 (50%), Positives = 7/14 (50%)
 Frame = +1

Query: 181 PDSRHRTRGRVHSH 222
           P   H T G  HSH
Sbjct: 412 PGPHHHTMGHGHSH 425


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 11  TLSSSTQASIEIDSLFEGIDFY 76
           TL SST A++   S  + ID Y
Sbjct: 204 TLMSSTNAALPKISYVKSIDVY 225


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = +1

Query: 178  GPDSRHRTRGRVHSHS*SAEAP 243
            GP   H T    HS S S   P
Sbjct: 1760 GPPVGHPTNASAHSRSGSQSMP 1781


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,189
Number of Sequences: 438
Number of extensions: 1749
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8060325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)