Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_N02
(276 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein S10|S... 108 2e-25
SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein S10|Schizosa... 107 2e-25
SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13 |Schizo... 25 2.6
SPAC824.08 |gda1|gdp1|guanosine-diphosphatase Gda1|Schizosacchar... 24 3.5
SPCC1919.09 |tif6||translation initiation factor eIF6|Schizosacc... 24 4.6
SPBC18E5.05c |||RNA polymerase II elongator complex subunit|Schi... 23 6.1
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 23 6.1
SPAC1093.02 |||pyridoxamine 5'-phosphate oxidase |Schizosaccharo... 23 6.1
SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog |Schi... 23 8.0
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 23 8.0
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 23 8.0
>SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein
S10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 108 bits (259), Expect = 2e-25
Identities = 48/81 (59%), Positives = 67/81 (82%)
Frame = +1
Query: 34 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 213
ML+PK+NR +I++ LF++GV+VAKKD++ PKHP++ +PNLQVIKA QSL SRGY+K ++
Sbjct: 1 MLIPKENRKAIHQALFQQGVLVAKKDFNLPKHPEVG-VPNLQVIKACQSLDSRGYLKTRY 59
Query: 214 AWRHLYWYLTNEGIEYLRIFL 276
W Y+ LTNEG+EYLR +L
Sbjct: 60 NWGWFYYTLTNEGVEYLREYL 80
>SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein
S10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 144
Score = 107 bits (258), Expect = 2e-25
Identities = 48/81 (59%), Positives = 66/81 (81%)
Frame = +1
Query: 34 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 213
ML+PK+NR +I++ LF +GV+VAKKD++ PKHP++ +PNLQVIKA QSL SRGY+K ++
Sbjct: 1 MLIPKENRKAIHQALFSQGVLVAKKDFNLPKHPEVG-VPNLQVIKACQSLDSRGYLKTRY 59
Query: 214 AWRHLYWYLTNEGIEYLRIFL 276
W Y+ LTNEG+EYLR +L
Sbjct: 60 NWGWFYYTLTNEGVEYLREYL 80
>SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 24.6 bits (51), Expect = 2.6
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = -1
Query: 153 VRDLLEIWMFGCMVVFLSYHDSLLE 79
+ + +IW FGC + + +H S E
Sbjct: 259 ITEKADIWSFGCTLYTIMFHASPFE 283
>SPAC824.08 |gda1|gdp1|guanosine-diphosphatase
Gda1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 556
Score = 24.2 bits (50), Expect = 3.5
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -2
Query: 230 YKCLHANCSLTYPLDLSDCIALI 162
+ CLH N SLT+P S+ ++
Sbjct: 366 HPCLHLNASLTHPDSKSEASEVV 388
>SPCC1919.09 |tif6||translation initiation factor
eIF6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 244
Score = 23.8 bits (49), Expect = 4.6
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 70 EYLFKEGVMVAKKDYHAPKHPDLEK 144
E L G +VA DY A HPD+E+
Sbjct: 99 ERLSALGNIVACNDYVALVHPDIER 123
>SPBC18E5.05c |||RNA polymerase II elongator complex
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 314
Score = 23.4 bits (48), Expect = 6.1
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -1
Query: 234 PV*MPPCELFLNISS 190
P +PPCE+FL+ +S
Sbjct: 140 PSYLPPCEVFLDFTS 154
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 23.4 bits (48), Expect = 6.1
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = -1
Query: 102 SYHDSLLEEVLIDRNTVLFWH 40
+YH L +E+ I +N ++ WH
Sbjct: 331 NYHWYLKKEINIPQNALISWH 351
>SPAC1093.02 |||pyridoxamine 5'-phosphate oxidase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 23.4 bits (48), Expect = 6.1
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = +1
Query: 151 NLQVIKAMQSLKSRGYVKEQFAWRHLYWYLTNEGI 255
NL K + LKS Y F W L + EGI
Sbjct: 91 NLGTSKKAKDLKSNPYASLSFWWEPLQRQVRVEGI 125
>SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 23.0 bits (47), Expect = 8.0
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -1
Query: 162 HLEVRDLLEIWMFGCMVVF 106
HLE+ + L WM GC+VV+
Sbjct: 26 HLELVEKLG-WMAGCVVVY 43
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 23.0 bits (47), Expect = 8.0
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = -2
Query: 266 LRYSIPSFVKYQYKCLHANCSLTYPLDLSDC 174
LRYSIP F ++ CSL + C
Sbjct: 412 LRYSIPVFQNLEHNINIGRCSLKKLSTIRSC 442
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 23.0 bits (47), Expect = 8.0
Identities = 13/50 (26%), Positives = 21/50 (42%)
Frame = +3
Query: 9 LSGKLVVQDVDAKTKPCFYL*VPLQGGSHGS*ERLPCTQTSRSREDP*PP 158
LS +Q + + Y+ VPLQ ++ P Q + + P PP
Sbjct: 143 LSSNQPIQQLPLPNQASPYIPVPLQQQQQSQPQQQPQQQQHQQPQQPQPP 192
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,157,835
Number of Sequences: 5004
Number of extensions: 20880
Number of successful extensions: 60
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 61717020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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