Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_N01
(353 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0270 + 17135464-17135467,17135583-17135655,17136253-171365... 177 3e-45
04_03_0510 - 16659486-16659564,16659772-16659947,16660464-166607... 176 4e-45
07_01_0467 - 3524598-3524837,3524939-3525466,3526242-3526892,352... 30 0.60
04_03_0182 - 12349072-12349149,12349459-12349656,12349746-123497... 29 0.79
11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861 29 1.1
03_01_0161 + 1307206-1307769,1307979-1308101,1308182-1308286,130... 29 1.1
02_04_0064 - 19375497-19375580,19375659-19375733,19376359-193765... 29 1.4
06_01_0913 - 7042230-7043332,7043420-7043621 28 2.4
05_03_0211 + 10236867-10237075,10238036-10238270,10238433-102386... 27 3.2
06_03_1515 - 30707600-30707613,30708093-30708167,30708596-307086... 27 4.2
05_05_0137 - 22641577-22642119 27 4.2
04_04_1534 + 34200538-34200589,34200677-34200857,34201701-342018... 27 4.2
02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57... 26 7.4
>02_03_0270 +
17135464-17135467,17135583-17135655,17136253-17136583,
17136916-17136969,17137219-17137394,17137607-17137685
Length = 238
Score = 177 bits (430), Expect = 3e-45
Identities = 85/114 (74%), Positives = 95/114 (83%), Gaps = 1/114 (0%)
Frame = +2
Query: 11 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQR-IHLVRSRGGNTKYRALR 187
MGISRD HKRRATGGK+ RKKRKYELGR ANTKL + + VR RGGN K+RALR
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALR 60
Query: 188 LDTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDARPFRQWY 349
LDTGN++WGSE TRKTRI+DVVYNASNNELVRT+TLVK+AIV VDA PF+QWY
Sbjct: 61 LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWY 114
>04_03_0510 -
16659486-16659564,16659772-16659947,16660464-16660797,
16661564-16661636,16661780-16661783
Length = 221
Score = 176 bits (429), Expect = 4e-45
Identities = 85/114 (74%), Positives = 95/114 (83%), Gaps = 1/114 (0%)
Frame = +2
Query: 11 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQR-IHLVRSRGGNTKYRALR 187
MGISRD HKRRATGGK+ RKKRKYELGR ANTKL + + VR RGGN K+RALR
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNLKWRALR 60
Query: 188 LDTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDARPFRQWY 349
LDTGN++WGSE TRKTRI+DVVYNASNNELVRT+TLVK+AIV VDA PF+QWY
Sbjct: 61 LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWY 114
>07_01_0467 -
3524598-3524837,3524939-3525466,3526242-3526892,
3527015-3527500,3527580-3527792,3527885-3528174,
3528276-3528418,3528633-3528855,3528983-3529160,
3529598-3529867
Length = 1073
Score = 29.9 bits (64), Expect = 0.60
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Frame = +2
Query: 83 RKYELGRPAANTKLGPQRIHLVRSR----GGNTKYRALRLDTGN-FAWGS 217
R+ +LG P+ +T+ P+R+ +++R K+ A DTG F WGS
Sbjct: 271 REGQLGYPSVDTQPTPRRVSSLKARIISVAAANKHSAAVADTGEVFTWGS 320
>04_03_0182 -
12349072-12349149,12349459-12349656,12349746-12349750,
12349928-12350041,12350129-12350240,12350363-12350377
Length = 173
Score = 29.5 bits (63), Expect = 0.79
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -3
Query: 234 LRVEHSDPHAKFPVSRRRARYLVLPPRDLTKWMRWGPSLV 115
LRV H H + +R R + + P ++ K RWG ++
Sbjct: 16 LRVMHFSGHGDWTTNRDRPTFTLYPLQECYKLWRWGTQMI 55
>11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861
Length = 158
Score = 29.1 bits (62), Expect = 1.1
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +2
Query: 38 KRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTK 172
KRR GG+RA R+K + E GR A + R RGG +
Sbjct: 45 KRRRGGGRRAAGRRKEEEEAGRRKAGEEARRGAGKRKRRRGGGRR 89
Score = 29.1 bits (62), Expect = 1.1
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +2
Query: 38 KRRATGGKRAPIRKKRKYELGRPAANTKLGPQRI-HLVRSRGGNTKYRALR 187
KRR GG+RA R+K + E GR A + + R RGG + R R
Sbjct: 81 KRRRGGGRRAAGRRKEEEEAGRRKAGEETRRRGAGRRKRRRGGRRRRRRRR 131
Score = 27.9 bits (59), Expect = 2.4
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +2
Query: 38 KRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTK 172
+RR GG+RA R+K + E GR A + R RGG +
Sbjct: 9 RRRRGGGRRAAGRRKEEEEAGRRKAGEEARRGAGKRKRRRGGGRR 53
>03_01_0161 +
1307206-1307769,1307979-1308101,1308182-1308286,
1308688-1308867,1308988-1309050,1309151-1309345,
1309704-1309805,1309885-1309947,1310045-1310113,
1310215-1310270,1310587-1310755
Length = 562
Score = 29.1 bits (62), Expect = 1.1
Identities = 16/61 (26%), Positives = 30/61 (49%)
Frame = +2
Query: 137 IHLVRSRGGNTKYRALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 316
+H + + GG T R +R C +++ ++V++ + NELV T +N I+
Sbjct: 376 LHGLLASGGGTADRCIRFWNTTTNMHLNCVDTGSQVCNLVWSKNVNELVSTHGYSQNQII 435
Query: 317 V 319
V
Sbjct: 436 V 436
>02_04_0064 -
19375497-19375580,19375659-19375733,19376359-19376514,
19377016-19377093,19377328-19377428,19377570-19377717,
19378172-19378316,19378803-19378906,19380257-19380385,
19380526-19380636,19380734-19380863,19381915-19382034,
19382360-19382481,19382965-19383048,19383241-19383357,
19383442-19383522,19384138-19384197,19384398-19384440,
19384528-19384626,19385353-19385564,19385964-19386091,
19386246-19386396
Length = 825
Score = 28.7 bits (61), Expect = 1.4
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -1
Query: 113 WQPGDLTHTSSSYEWAHVCRP*PSSYANDHD 21
W+ GD+ HT ++ W+ C +YA HD
Sbjct: 570 WKMGDIVHTLTNRRWSEKC----VTYAESHD 596
>06_01_0913 - 7042230-7043332,7043420-7043621
Length = 434
Score = 27.9 bits (59), Expect = 2.4
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 198 PVSRRRARYLVLPPRDLTKWMRWGPSLVLAAGRPNSY 88
P +R+ R+ P +T + W P L +AAGRP ++
Sbjct: 180 PGTRKFWRW-AFPTHGVTVSVYWAPFLAMAAGRPENF 215
>05_03_0211 +
10236867-10237075,10238036-10238270,10238433-10238602,
10240324-10240466,10240590-10240767,10241441-10242008,
10243001-10243113,10244521-10244764,10245201-10245278,
10246500-10246727
Length = 721
Score = 27.5 bits (58), Expect = 3.2
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Frame = +3
Query: 186 VLILETSHGDLNVQPARLVLLMLFIMPLTMNWCVPR-----PW*RMLLSWW 323
+L L L + P RL++LM+F+ T N PR W R L WW
Sbjct: 652 ILALVVMALSLAIVPTRLLVLMMFLEVFT-NHSPPRRASTERWTRRLREWW 701
>06_03_1515 -
30707600-30707613,30708093-30708167,30708596-30708647,
30708751-30708831,30709145-30709219,30709870-30709977,
30710026-30710032,30710133-30710268,30710361-30710685
Length = 290
Score = 27.1 bits (57), Expect = 4.2
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -3
Query: 213 PHAKFPVSRRRARYLVLPPRDLTKWMRWGP 124
P +RRR R+ + PPR +RW P
Sbjct: 18 PSPAVAATRRRLRFPLAPPRPRPPPLRWSP 47
>05_05_0137 - 22641577-22642119
Length = 180
Score = 27.1 bits (57), Expect = 4.2
Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
Frame = -3
Query: 213 PHAKFPVSRR-------RARYLVLPPRDLTKWMRWGPSLVLAAGRPNSYFLFLRMGARLP 55
PHA +S R R R +PP LT G L + P S LFLR GAR
Sbjct: 27 PHAALAISHRGKSCVRARGRRGRIPPAPLTA----GHESCLVSAVPLSGTLFLRSGAREL 82
Query: 54 PVA 46
P+A
Sbjct: 83 PLA 85
>04_04_1534 +
34200538-34200589,34200677-34200857,34201701-34201842,
34201963-34202032,34202169-34202302
Length = 192
Score = 27.1 bits (57), Expect = 4.2
Identities = 18/42 (42%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = -3
Query: 153 DLTKWMRWGPSLVLAAGRPNSYFLFLRMGARLPPV---ALLL 37
DL W R S AG +FLF R G P V ALLL
Sbjct: 20 DLVLWRRRNVSAAAVAGATAVWFLFERAGYSFPSVMANALLL 61
>02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-579174,
579266-579370,579975-580028,580244-580344,580454-581423,
582030-582203,582341-582643,582719-582856,582993-583247,
584230-584370,585008-585289,585395-585540,585627-585690,
585723-585799,586285-586301,587728-587867,587972-588029,
588121-588218,588727-588776,589260-589743
Length = 2630
Score = 26.2 bits (55), Expect = 7.4
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 201 TSHGDLNVQPARLVLLMLFIMPLTMNWCVPRP 296
TSHG+ + +P+ L L+ F++P + N + P
Sbjct: 2527 TSHGNQHQRPSILASLLPFVLPSSSNPSLTAP 2558
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,445,546
Number of Sequences: 37544
Number of extensions: 244454
Number of successful extensions: 598
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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