Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_N01
(353 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8 prot... 213 1e-55
BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8 pr... 213 1e-55
AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8 pr... 213 1e-55
AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8 pr... 213 1e-55
AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8 pr... 154 6e-38
AY861434-1|AAX56124.1| 1329|Homo sapiens protocadherin 11X isofo... 28 9.5
AY861433-1|AAX56123.1| 1310|Homo sapiens protocadherin 11X isofo... 28 9.5
AY861432-1|AAX56122.1| 1339|Homo sapiens protocadherin 11X isofo... 28 9.5
AL133321-2|CAI41436.1| 1337|Homo sapiens protocadherin 11 X-link... 28 9.5
AL133321-1|CAI41435.1| 1347|Homo sapiens protocadherin 11 X-link... 28 9.5
AL133274-3|CAI41631.1| 1337|Homo sapiens protocadherin 11 X-link... 28 9.5
AL133274-2|CAI41629.1| 1310|Homo sapiens protocadherin 11 X-link... 28 9.5
AL133274-1|CAI41630.1| 1347|Homo sapiens protocadherin 11 X-link... 28 9.5
AL121869-5|CAI41414.1| 1337|Homo sapiens protocadherin 11 X-link... 28 9.5
AL121869-4|CAI41412.1| 1310|Homo sapiens protocadherin 11 X-link... 28 9.5
AL121869-3|CAI41413.1| 1347|Homo sapiens protocadherin 11 X-link... 28 9.5
AJ564945-1|CAD92424.1| 224|Homo sapiens protocadherin protein. 28 9.5
AF332219-1|AAK13471.1| 1337|Homo sapiens protocadherin 11 protein. 28 9.5
AF332218-1|AAK13470.1| 1347|Homo sapiens protocadherin 11 protein. 28 9.5
AF217288-1|AAK82656.1| 1310|Homo sapiens protocadherin-S protein. 28 9.5
AF206516-1|AAK82655.1| 1347|Homo sapiens protocadherin-S protein. 28 9.5
AB037747-1|BAA92564.1| 424|Homo sapiens KIAA1326 protein protein. 28 9.5
>X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 213 bits (521), Expect = 1e-55
Identities = 95/114 (83%), Positives = 103/114 (90%)
Frame = +2
Query: 11 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 190
MGISRD+WHKRR TGGKR P KKRKYELGRPAANTK+GP+RIH VR RGGN KYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 191 DTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDARPFRQWYE 352
D GNF+WGSEC TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+ P+RQWYE
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYE 114
>BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 213 bits (521), Expect = 1e-55
Identities = 95/114 (83%), Positives = 103/114 (90%)
Frame = +2
Query: 11 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 190
MGISRD+WHKRR TGGKR P KKRKYELGRPAANTK+GP+RIH VR RGGN KYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 191 DTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDARPFRQWYE 352
D GNF+WGSEC TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+ P+RQWYE
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYE 114
>AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 213 bits (521), Expect = 1e-55
Identities = 95/114 (83%), Positives = 103/114 (90%)
Frame = +2
Query: 11 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 190
MGISRD+WHKRR TGGKR P KKRKYELGRPAANTK+GP+RIH VR RGGN KYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 191 DTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDARPFRQWYE 352
D GNF+WGSEC TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+ P+RQWYE
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYE 114
>AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 213 bits (521), Expect = 1e-55
Identities = 95/114 (83%), Positives = 103/114 (90%)
Frame = +2
Query: 11 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 190
MGISRD+WHKRR TGGKR P KKRKYELGRPAANTK+GP+RIH VR RGGN KYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 191 DTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDARPFRQWYE 352
D GNF+WGSEC TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+ P+RQWYE
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYE 114
>AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8
protein.
Length = 188
Score = 154 bits (374), Expect = 6e-38
Identities = 79/114 (69%), Positives = 86/114 (75%)
Frame = +2
Query: 11 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 190
MGISRD+WHKRR TGGKR P KKRKYELGRPAANTK+GP+RIH VR RGG
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGG--------- 51
Query: 191 DTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDARPFRQWYE 352
C TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+ P+RQWYE
Sbjct: 52 ----------C-TRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYE 94
>AY861434-1|AAX56124.1| 1329|Homo sapiens protocadherin 11X isoform 6
protein.
Length = 1329
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -1
Query: 116 CWQPGDLTHTSSSYEWAH-VCRP*PSSYANDHD*YPSPR 3
CW P L H+SSS A +C P S A+ + SPR
Sbjct: 1134 CWMPASLDHSSSSQAQASALCHSPPLSQASTQ--HHSPR 1170
>AY861433-1|AAX56123.1| 1310|Homo sapiens protocadherin 11X isoform 7
protein.
Length = 1310
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -1
Query: 116 CWQPGDLTHTSSSYEWAH-VCRP*PSSYANDHD*YPSPR 3
CW P L H+SSS A +C P S A+ + SPR
Sbjct: 1115 CWMPASLDHSSSSQAQASALCHSPPLSQASTQ--HHSPR 1151
>AY861432-1|AAX56122.1| 1339|Homo sapiens protocadherin 11X isoform 8
protein.
Length = 1339
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -1
Query: 116 CWQPGDLTHTSSSYEWAH-VCRP*PSSYANDHD*YPSPR 3
CW P L H+SSS A +C P S A+ + SPR
Sbjct: 1144 CWMPASLDHSSSSQAQASALCHSPPLSQASTQ--HHSPR 1180
>AL133321-2|CAI41436.1| 1337|Homo sapiens protocadherin 11 X-linked
protein.
Length = 1337
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -1
Query: 116 CWQPGDLTHTSSSYEWAH-VCRP*PSSYANDHD*YPSPR 3
CW P L H+SSS A +C P S A+ + SPR
Sbjct: 1142 CWMPASLDHSSSSQAQASALCHSPPLSQASTQ--HHSPR 1178
>AL133321-1|CAI41435.1| 1347|Homo sapiens protocadherin 11 X-linked
protein.
Length = 1347
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -1
Query: 116 CWQPGDLTHTSSSYEWAH-VCRP*PSSYANDHD*YPSPR 3
CW P L H+SSS A +C P S A+ + SPR
Sbjct: 1152 CWMPASLDHSSSSQAQASALCHSPPLSQASTQ--HHSPR 1188
>AL133274-3|CAI41631.1| 1337|Homo sapiens protocadherin 11 X-linked
protein.
Length = 1337
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -1
Query: 116 CWQPGDLTHTSSSYEWAH-VCRP*PSSYANDHD*YPSPR 3
CW P L H+SSS A +C P S A+ + SPR
Sbjct: 1142 CWMPASLDHSSSSQAQASALCHSPPLSQASTQ--HHSPR 1178
>AL133274-2|CAI41629.1| 1310|Homo sapiens protocadherin 11 X-linked
protein.
Length = 1310
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -1
Query: 116 CWQPGDLTHTSSSYEWAH-VCRP*PSSYANDHD*YPSPR 3
CW P L H+SSS A +C P S A+ + SPR
Sbjct: 1115 CWMPASLDHSSSSQAQASALCHSPPLSQASTQ--HHSPR 1151
>AL133274-1|CAI41630.1| 1347|Homo sapiens protocadherin 11 X-linked
protein.
Length = 1347
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -1
Query: 116 CWQPGDLTHTSSSYEWAH-VCRP*PSSYANDHD*YPSPR 3
CW P L H+SSS A +C P S A+ + SPR
Sbjct: 1152 CWMPASLDHSSSSQAQASALCHSPPLSQASTQ--HHSPR 1188
>AL121869-5|CAI41414.1| 1337|Homo sapiens protocadherin 11 X-linked
protein.
Length = 1337
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -1
Query: 116 CWQPGDLTHTSSSYEWAH-VCRP*PSSYANDHD*YPSPR 3
CW P L H+SSS A +C P S A+ + SPR
Sbjct: 1142 CWMPASLDHSSSSQAQASALCHSPPLSQASTQ--HHSPR 1178
>AL121869-4|CAI41412.1| 1310|Homo sapiens protocadherin 11 X-linked
protein.
Length = 1310
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -1
Query: 116 CWQPGDLTHTSSSYEWAH-VCRP*PSSYANDHD*YPSPR 3
CW P L H+SSS A +C P S A+ + SPR
Sbjct: 1115 CWMPASLDHSSSSQAQASALCHSPPLSQASTQ--HHSPR 1151
>AL121869-3|CAI41413.1| 1347|Homo sapiens protocadherin 11 X-linked
protein.
Length = 1347
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -1
Query: 116 CWQPGDLTHTSSSYEWAH-VCRP*PSSYANDHD*YPSPR 3
CW P L H+SSS A +C P S A+ + SPR
Sbjct: 1152 CWMPASLDHSSSSQAQASALCHSPPLSQASTQ--HHSPR 1188
>AJ564945-1|CAD92424.1| 224|Homo sapiens protocadherin protein.
Length = 224
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -1
Query: 116 CWQPGDLTHTSSSYEWAH-VCRP*PSSYANDHD*YPSPR 3
CW P L H+SSS A +C P S A+ + SPR
Sbjct: 29 CWMPASLDHSSSSQAQASALCHSPPLSQASTQ--HHSPR 65
>AF332219-1|AAK13471.1| 1337|Homo sapiens protocadherin 11 protein.
Length = 1337
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -1
Query: 116 CWQPGDLTHTSSSYEWAH-VCRP*PSSYANDHD*YPSPR 3
CW P L H+SSS A +C P S A+ + SPR
Sbjct: 1142 CWMPASLDHSSSSQAQASALCHSPPLSQASTQ--HHSPR 1178
>AF332218-1|AAK13470.1| 1347|Homo sapiens protocadherin 11 protein.
Length = 1347
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -1
Query: 116 CWQPGDLTHTSSSYEWAH-VCRP*PSSYANDHD*YPSPR 3
CW P L H+SSS A +C P S A+ + SPR
Sbjct: 1152 CWMPASLDHSSSSQAQASALCHSPPLSQASTQ--HHSPR 1188
>AF217288-1|AAK82656.1| 1310|Homo sapiens protocadherin-S protein.
Length = 1310
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -1
Query: 116 CWQPGDLTHTSSSYEWAH-VCRP*PSSYANDHD*YPSPR 3
CW P L H+SSS A +C P S A+ + SPR
Sbjct: 1115 CWMPASLDHSSSSQAQASALCHSPPLSQASTQ--HHSPR 1151
>AF206516-1|AAK82655.1| 1347|Homo sapiens protocadherin-S protein.
Length = 1347
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -1
Query: 116 CWQPGDLTHTSSSYEWAH-VCRP*PSSYANDHD*YPSPR 3
CW P L H+SSS A +C P S A+ + SPR
Sbjct: 1152 CWMPASLDHSSSSQAQASALCHSPPLSQASTQ--HHSPR 1188
>AB037747-1|BAA92564.1| 424|Homo sapiens KIAA1326 protein protein.
Length = 424
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -1
Query: 116 CWQPGDLTHTSSSYEWAH-VCRP*PSSYANDHD*YPSPR 3
CW P L H+SSS A +C P S A+ + SPR
Sbjct: 229 CWMPASLDHSSSSQAQASALCHSPPLSQASTQ--HHSPR 265
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,142,643
Number of Sequences: 237096
Number of extensions: 1330585
Number of successful extensions: 2390
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 2364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2390
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2075554296
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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