Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_N01
(353 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal prote... 183 3e-47
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis... 33 0.076
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis... 33 0.076
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis... 33 0.076
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis... 33 0.076
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis... 33 0.076
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res... 33 0.076
U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha ... 30 0.53
AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alph... 30 0.53
AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alph... 30 0.53
Z81483-8|CAB03966.2| 1776|Caenorhabditis elegans Hypothetical pr... 29 1.2
Z81471-1|CAB03887.2| 1776|Caenorhabditis elegans Hypothetical pr... 29 1.2
U20861-9|AAN84854.1| 192|Caenorhabditis elegans Hypothetical pr... 28 2.2
Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical pr... 26 6.6
Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical p... 26 6.6
Z66494-6|CAE48497.1| 423|Caenorhabditis elegans Hypothetical pr... 26 6.6
Z66494-5|CAA91259.1| 473|Caenorhabditis elegans Hypothetical pr... 26 6.6
U64844-14|AAO25986.1| 375|Caenorhabditis elegans Hypothetical p... 26 6.6
U64844-13|AAD56301.1| 453|Caenorhabditis elegans Hypothetical p... 26 6.6
U88308-8|AAO61436.1| 88|Caenorhabditis elegans Ribosomal prote... 26 8.7
U88308-7|AAB42322.1| 207|Caenorhabditis elegans Ribosomal prote... 26 8.7
U64604-1|AAF98623.1| 243|Caenorhabditis elegans Hypothetical pr... 26 8.7
>U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 8 protein.
Length = 208
Score = 183 bits (446), Expect = 3e-47
Identities = 83/114 (72%), Positives = 95/114 (83%)
Frame = +2
Query: 11 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 190
MGISRD WHKR TG + KKRK+ELGRPAANTK+G R+ LVR+RGGN KYRALRL
Sbjct: 1 MGISRDSWHKRYKTGATQPVPHKKRKFELGRPAANTKIGAHRVRLVRTRGGNEKYRALRL 60
Query: 191 DTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDARPFRQWYE 352
D+GNF+W SE +TRKTRI+D +YNA+NNELVRTKTLVK AI+ VDA PFRQWYE
Sbjct: 61 DSGNFSWASEQTTRKTRIVDTMYNATNNELVRTKTLVKGAIISVDAAPFRQWYE 114
>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
resistance related protein1 protein.
Length = 1540
Score = 32.7 bits (71), Expect = 0.076
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +2
Query: 179 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 283
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform e protein.
Length = 1534
Score = 32.7 bits (71), Expect = 0.076
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +2
Query: 179 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 283
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform c protein.
Length = 1534
Score = 32.7 bits (71), Expect = 0.076
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +2
Query: 179 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 283
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform b protein.
Length = 1534
Score = 32.7 bits (71), Expect = 0.076
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +2
Query: 179 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 283
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform a protein.
Length = 1528
Score = 32.7 bits (71), Expect = 0.076
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +2
Query: 179 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 283
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
resistance-associatedprotein protein.
Length = 1534
Score = 32.7 bits (71), Expect = 0.076
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +2
Query: 179 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 283
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha
family protein 3 protein.
Length = 514
Score = 29.9 bits (64), Expect = 0.53
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 132 WGPSLVLAAGRPNSYFLFLRMGARLPPVALLLCQ*SRLIPI 10
W S V +GRPN +++G P A+L C S++I +
Sbjct: 383 WAISNVTISGRPNQVEQMVKLGVLRPFCAMLSCTDSQIIQV 423
>AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alpha 3
protein.
Length = 514
Score = 29.9 bits (64), Expect = 0.53
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 132 WGPSLVLAAGRPNSYFLFLRMGARLPPVALLLCQ*SRLIPI 10
W S V +GRPN +++G P A+L C S++I +
Sbjct: 383 WAISNVTISGRPNQVEQMVKLGVLRPFCAMLSCTDSQIIQV 423
>AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alpha-3
subunit protein.
Length = 423
Score = 29.9 bits (64), Expect = 0.53
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 132 WGPSLVLAAGRPNSYFLFLRMGARLPPVALLLCQ*SRLIPI 10
W S V +GRPN +++G P A+L C S++I +
Sbjct: 292 WAISNVTISGRPNQVEQMVKLGVLRPFCAMLSCTDSQIIQV 332
>Z81483-8|CAB03966.2| 1776|Caenorhabditis elegans Hypothetical protein
C14B4.2 protein.
Length = 1776
Score = 28.7 bits (61), Expect = 1.2
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 221 CSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDARPF 337
C+ R + + S+N+LV K VKNAI +D R F
Sbjct: 1671 CAPRPVLTMPIQRMPSSNDLVMKKLQVKNAISNLDLRSF 1709
>Z81471-1|CAB03887.2| 1776|Caenorhabditis elegans Hypothetical protein
C14B4.2 protein.
Length = 1776
Score = 28.7 bits (61), Expect = 1.2
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 221 CSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDARPF 337
C+ R + + S+N+LV K VKNAI +D R F
Sbjct: 1671 CAPRPVLTMPIQRMPSSNDLVMKKLQVKNAISNLDLRSF 1709
>U20861-9|AAN84854.1| 192|Caenorhabditis elegans Hypothetical
protein C28H8.9b protein.
Length = 192
Score = 27.9 bits (59), Expect = 2.2
Identities = 12/39 (30%), Positives = 16/39 (41%)
Frame = +2
Query: 5 EEMGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTK 121
+E G D W R+ G P++K A NTK
Sbjct: 150 DEFGSDEDDWSSRKRRKGNLGPVQKATSSRKKNAARNTK 188
>Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical protein
C26C6.1a protein.
Length = 1883
Score = 26.2 bits (55), Expect = 6.6
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Frame = +2
Query: 92 ELGRPAANTKLGPQRIHLVRSR---GGNTKYRALRLDTGNFAWGSEC 223
E R L +R L S+ G T ++ +R +TG F W +C
Sbjct: 1163 EEDRARLEVSLDMERFELEASKDEESGKTYFQQIRSETGKFFWLGQC 1209
>Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical
protein C26C6.1a protein.
Length = 1883
Score = 26.2 bits (55), Expect = 6.6
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Frame = +2
Query: 92 ELGRPAANTKLGPQRIHLVRSR---GGNTKYRALRLDTGNFAWGSEC 223
E R L +R L S+ G T ++ +R +TG F W +C
Sbjct: 1163 EEDRARLEVSLDMERFELEASKDEESGKTYFQQIRSETGKFFWLGQC 1209
>Z66494-6|CAE48497.1| 423|Caenorhabditis elegans Hypothetical
protein C34C6.5b protein.
Length = 423
Score = 26.2 bits (55), Expect = 6.6
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = -2
Query: 298 QGLGTHQFIVRGIINNINNTSLAG*TFRSPCEVSSIKTQGTIFSV 164
+ LG H+F V G I + N S G P + +FSV
Sbjct: 209 KSLGHHRFTVMGFIRSCNLRSYKGRLTYRPYKPKGFHPSSNVFSV 253
>Z66494-5|CAA91259.1| 473|Caenorhabditis elegans Hypothetical
protein C34C6.5a protein.
Length = 473
Score = 26.2 bits (55), Expect = 6.6
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = -2
Query: 298 QGLGTHQFIVRGIINNINNTSLAG*TFRSPCEVSSIKTQGTIFSV 164
+ LG H+F V G I + N S G P + +FSV
Sbjct: 259 KSLGHHRFTVMGFIRSCNLRSYKGRLTYRPYKPKGFHPSSNVFSV 303
>U64844-14|AAO25986.1| 375|Caenorhabditis elegans Hypothetical
protein T22F3.11b protein.
Length = 375
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -3
Query: 144 KWMRWGPSLVLAAGRPNSYFLFLRMGARLP 55
KW+ W +L G L+++ GARLP
Sbjct: 65 KWILWAVALGTMLGTVPINMLYVKYGARLP 94
>U64844-13|AAD56301.1| 453|Caenorhabditis elegans Hypothetical
protein T22F3.11a protein.
Length = 453
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -3
Query: 144 KWMRWGPSLVLAAGRPNSYFLFLRMGARLP 55
KW+ W +L G L+++ GARLP
Sbjct: 65 KWILWAVALGTMLGTVPINMLYVKYGARLP 94
>U88308-8|AAO61436.1| 88|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 13, isoform b protein.
Length = 88
Score = 25.8 bits (54), Expect = 8.7
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 23 RDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRI-HLVRS 154
R HWHKR T + P RK R+ + R A ++ P+ + L+RS
Sbjct: 15 RKHWHKRIKTWFDQ-PARKLRRRQ-NRQAKAVEIAPRPVAGLLRS 57
>U88308-7|AAB42322.1| 207|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 13, isoform a protein.
Length = 207
Score = 25.8 bits (54), Expect = 8.7
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 23 RDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRI-HLVRS 154
R HWHKR T + P RK R+ + R A ++ P+ + L+RS
Sbjct: 15 RKHWHKRIKTWFDQ-PARKLRRRQ-NRQAKAVEIAPRPVAGLLRS 57
>U64604-1|AAF98623.1| 243|Caenorhabditis elegans Hypothetical
protein F49E7.2 protein.
Length = 243
Score = 25.8 bits (54), Expect = 8.7
Identities = 7/22 (31%), Positives = 16/22 (72%)
Frame = +3
Query: 159 VVTLNIVPCVLILETSHGDLNV 224
++ +N+ C+L+ + +HGD+ V
Sbjct: 39 ILIVNVQSCILLAKDNHGDMKV 60
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,966,949
Number of Sequences: 27780
Number of extensions: 184463
Number of successful extensions: 476
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 471339352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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