Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_M24
         (200 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|ch...    25   1.4  
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra...    25   1.8  
SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c...    24   2.4  
SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch...    24   2.4  
SPBC56F2.12 |ilv5||acetohydroxyacid reductoisomerase|Schizosacch...    23   4.2  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    23   7.3  
SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyc...    23   7.3  
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo...    22   9.7  
SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|c...    22   9.7  
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    22   9.7  

>SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 81  YMQCRFYHYQRPGRHFYGAPSC 16
           Y+  R+Y YQR G  ++ A  C
Sbjct: 147 YLPLRYYTYQRKGYEYFIADFC 168


>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
           3-phosphatidyltransferase Pis1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 45  QGAGSGKTGTAYNIYIIHLHYSSSVNIFI 131
           QGA S KT T  + +++ L+Y ++  +FI
Sbjct: 134 QGASSHKTVTKKHNWMLRLYYGNNKVLFI 162


>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 559

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 4/23 (17%)
 Frame = +3

Query: 90  IIHLHYS----SSVNIFIVYWGL 146
           +IHL+Y     S +  F++YWGL
Sbjct: 495 VIHLYYIGYFYSFMTAFLIYWGL 517


>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 587

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 69  GTAYNIYIIHLHYSSSVNIFIVYWG 143
           GTA  + I   H  ++ N + VYWG
Sbjct: 139 GTAAGVMITASHNPAAYNGYKVYWG 163


>SPBC56F2.12 |ilv5||acetohydroxyacid
           reductoisomerase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 4   CRNSARGGAVEMSPRALVVVKPAL 75
           C  +AR GA++ +PR L   K  L
Sbjct: 323 CSTTARRGAIDWTPRFLEANKKVL 346


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
            Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = -3

Query: 54   QRPGRHFY 31
            +RPGRHFY
Sbjct: 1396 ERPGRHFY 1403


>SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 78  YNIYIIHLHYSSSVNIFIVYWG 143
           YN  I  LHY ++ +++IV  G
Sbjct: 123 YNANINKLHYDAATDLYIVGHG 144


>SPCC1682.03c |mug174||meiotically upregulated gene
           Mug174|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 626

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 5/16 (31%), Positives = 11/16 (68%)
 Frame = -3

Query: 66  FYHYQRPGRHFYGAPS 19
           + HY  P ++++ +PS
Sbjct: 356 YLHYDEPSQYYFSSPS 371


>SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 320

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 36  NVAQGAGSGKTGTAY 80
           NVA GAGSG  G  +
Sbjct: 131 NVASGAGSGLCGALF 145


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 51  AGSGKTGTAYNIYIIHLHYSSSVNIFIVYWGLL 149
           AG G+TG     Y+I+ H   + N  I Y  ++
Sbjct: 288 AGLGRTGCLIGAYLIYKH-CFTANEVIAYMRIM 319


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 743,439
Number of Sequences: 5004
Number of extensions: 10977
Number of successful extensions: 25
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 46
effective length of database: 2,132,294
effective search space used: 42645880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)