Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_M24
         (200 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1220 - 28505306-28508497                                         26   3.6  
04_04_0010 - 22137258-22137428,22137734-22137794,22137917-221379...    26   4.8  
11_06_0732 - 26740718-26741704,26741876-26742478                       25   6.4  
10_02_0149 - 5873273-5874514,5874826-5875731,5875903-5876505           25   6.4  
08_01_0973 + 9803917-9804519,9804691-9805596,9805908-9807149           25   6.4  
06_03_0228 - 18439659-18440900,18441212-18441736,18441813-184421...    25   6.4  
06_01_1011 + 7879283-7879885,7880057-7880962,7881274-7882515           25   6.4  
05_03_0226 - 10645036-10646001,10646313-10646828,10646905-106472...    25   6.4  
04_03_0328 + 14440877-14441479,14441650-14441955,14442032-14442637     25   6.4  
04_04_1423 - 33455818-33457076,33457165-33457201                       25   8.4  
02_02_0310 - 8842286-8843314                                           25   8.4  

>06_03_1220 - 28505306-28508497
          Length = 1063

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 33  RNVAQGAGSGKTGTAYNIYIIHLHYSSSVNIFIVYWGL 146
           RNV  G  S + G    + +  L ++S VNI  ++W L
Sbjct: 376 RNVMGGQVSPEIGNLKELELFSLTFNSFVNISGMFWNL 413


>04_04_0010 -
           22137258-22137428,22137734-22137794,22137917-22137984,
           22138524-22138733,22138867-22138907,22139011-22139060,
           22139260-22139348,22139468-22139542,22139791-22139882,
           22140131-22140182,22140515-22140631,22141267-22141496,
           22141618-22141672,22141781-22141900
          Length = 476

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 24  GRRRNVAQG-AGSGKTGTAYNIYIIHLHYSSSVNIFI 131
           G RR + +G AGSG   +   + ++ LH    ++IFI
Sbjct: 117 GARRLLGEGTAGSGHCSSKGKVPLLSLHAIEQIHIFI 153


>11_06_0732 - 26740718-26741704,26741876-26742478
          Length = 529

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 15  GTRGRRRNVAQGAGSGK 65
           G RGR R++  GAGSG+
Sbjct: 112 GGRGRGRSLTNGAGSGR 128


>10_02_0149 - 5873273-5874514,5874826-5875731,5875903-5876505
          Length = 916

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 15  GTRGRRRNVAQGAGSGK 65
           G RGR R++  GAGSG+
Sbjct: 112 GGRGRGRSLTNGAGSGR 128


>08_01_0973 + 9803917-9804519,9804691-9805596,9805908-9807149
          Length = 916

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 15  GTRGRRRNVAQGAGSGK 65
           G RGR R++  GAGSG+
Sbjct: 112 GGRGRGRSLTNGAGSGR 128


>06_03_0228 -
           18439659-18440900,18441212-18441736,18441813-18442118,
           18442290-18442877
          Length = 886

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 15  GTRGRRRNVAQGAGSGK 65
           G RGR R++  GAGSG+
Sbjct: 107 GGRGRGRSLTNGAGSGR 123


>06_01_1011 + 7879283-7879885,7880057-7880962,7881274-7882515
          Length = 916

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 15  GTRGRRRNVAQGAGSGK 65
           G RGR R++  GAGSG+
Sbjct: 112 GGRGRGRSLTNGAGSGR 128


>05_03_0226 -
           10645036-10646001,10646313-10646828,10646905-10647210,
           10647382-10647984
          Length = 796

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 15  GTRGRRRNVAQGAGSGK 65
           G RGR R++  GAGSG+
Sbjct: 112 GGRGRGRSLTNGAGSGR 128


>04_03_0328 + 14440877-14441479,14441650-14441955,14442032-14442637
          Length = 504

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 15  GTRGRRRNVAQGAGSGK 65
           G RGR R++  GAGSG+
Sbjct: 112 GGRGRGRSLTNGAGSGR 128


>04_04_1423 - 33455818-33457076,33457165-33457201
          Length = 431

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 12  FGTRGRRRNVAQGAGSGKTG 71
           F   GRRRN+  GAG+G  G
Sbjct: 299 FEMLGRRRNLELGAGAGAHG 318


>02_02_0310 - 8842286-8843314
          Length = 342

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -3

Query: 108 NNEGVL-YICYMQCRFYHYQRPGRHFYG 28
           + +G L + C   CR+ H+ R G H +G
Sbjct: 87  DQQGFLRFPCRYHCRYRHHMRHGGHRHG 114


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,994,544
Number of Sequences: 37544
Number of extensions: 73660
Number of successful extensions: 163
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 14,793,348
effective HSP length: 46
effective length of database: 13,066,324
effective search space used: 261326480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)