Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_M24
         (200 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92784-2|CAB07193.3| 2029|Caenorhabditis elegans Hypothetical pr...    27   1.8  
Z92834-11|CAB07388.2|  594|Caenorhabditis elegans Hypothetical p...    25   5.6  
AF016670-8|AAB66101.1|  783|Caenorhabditis elegans Hypothetical ...    25   7.4  
Z81585-2|CAB04682.2|  303|Caenorhabditis elegans Hypothetical pr...    25   9.8  

>Z92784-2|CAB07193.3| 2029|Caenorhabditis elegans Hypothetical protein
            F31C3.3 protein.
          Length = 2029

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 197  IILRCNCHLYKCFFS 153
            I+ RC+C +Y C+FS
Sbjct: 1526 IVSRCSCQIYFCYFS 1540


>Z92834-11|CAB07388.2|  594|Caenorhabditis elegans Hypothetical
           protein F39B2.8 protein.
          Length = 594

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 57  SGKTGTAYNIYIIHLHYSSSVNIFIV 134
           SG+  T + +  +HL  + SVNI I+
Sbjct: 416 SGRADTLFIVSFVHLQLTVSVNIVII 441


>AF016670-8|AAB66101.1|  783|Caenorhabditis elegans Hypothetical
           protein K02F6.1 protein.
          Length = 783

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 6   QEFGTRGRRRNVAQGAGSGKTGTAYNIYIIHLHYSSS 116
           +  G+R  R  V+  AG+ +  +  NI  IH+  S S
Sbjct: 636 ESVGSRSAREVVSSVAGNARNASGANITTIHVTESKS 672


>Z81585-2|CAB04682.2|  303|Caenorhabditis elegans Hypothetical
           protein T05E12.2 protein.
          Length = 303

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = -3

Query: 180 LSPLQMFFFFLIIPNT 133
           L+PLQ FFF+L +P++
Sbjct: 80  LAPLQNFFFYLGLPSS 95


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,268,094
Number of Sequences: 27780
Number of extensions: 66039
Number of successful extensions: 103
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 12,740,198
effective HSP length: 46
effective length of database: 11,462,318
effective search space used: 229246360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)