Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_M23
         (346 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0113 + 897970-898038,898148-898271,898811-898896,898996-89...    79   9e-16
03_02_0295 + 7178921-7179451,7180083-7180448,7181316-7181450,718...    29   0.74 
07_03_0260 + 15928932-15929255,15930174-15930347                       27   3.9  
05_03_0090 - 8330283-8330831                                           27   3.9  
05_04_0119 - 18169729-18169887,18170515-18170653,18170728-181709...    27   5.2  
08_02_1595 - 28114751-28114858,28115018-28115283,28116609-281167...    26   9.1  
08_01_0977 - 9839362-9839524,9839656-9839744                           26   9.1  

>08_01_0113 +
           897970-898038,898148-898271,898811-898896,898996-899049
          Length = 110

 Score = 79.0 bits (186), Expect = 9e-16
 Identities = 37/66 (56%), Positives = 49/66 (74%)
 Frame = +3

Query: 75  SKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWSGLFAKALEGINVRDLITN 254
           S +E+AC  +ALIL DD + +T EKI+T++KAA + VE YW GLFAK LE  +V DLI +
Sbjct: 2   SSSEVACTLAALILHDDGIPITSEKIATLVKAANIKVEAYWPGLFAKLLEHRSVDDLILS 61

Query: 255 IGSGVG 272
           +GSG G
Sbjct: 62  VGSGGG 67


>03_02_0295 +
           7178921-7179451,7180083-7180448,7181316-7181450,
           7181533-7181606,7181960-7181999,7182178-7182223,
           7182398-7182477,7182585-7182760,7182848-7182973,
           7183338-7183430,7184135-7184260,7184815-7184884,
           7185262-7185344,7186216-7186329,7186884-7186983,
           7187557-7187583
          Length = 728

 Score = 29.5 bits (63), Expect = 0.74
 Identities = 20/58 (34%), Positives = 28/58 (48%)
 Frame = +3

Query: 48  LARITFKMASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWSGLFAKAL 221
           LAR  +K A KA+  C Y AL  + D+  +T E+ S +L +     E  W   F   L
Sbjct: 365 LARQWYKAAVKADPLC-YEALECLVDNYMLTCEEESELLSSLKFGKEDGWLSAFYSCL 421


>07_03_0260 + 15928932-15929255,15930174-15930347
          Length = 165

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 108 GRSKHKLIQLLMPF*MLYVQVAKR 37
           GR+ HKL+Q+ +PF +L V  A R
Sbjct: 119 GRATHKLLQMYVPFAVLAVIAALR 142


>05_03_0090 - 8330283-8330831
          Length = 182

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 127 MSPLPVRKSQPY*KRLL*MLSRTGLVYLQRPWRA 228
           +SPL  R+S P     +    + GLV + +PWR+
Sbjct: 122 VSPLQGRRSAPVGHLAIRQADKVGLVLVTQPWRS 155


>05_04_0119 -
           18169729-18169887,18170515-18170653,18170728-18170974,
           18171585-18171968,18172251-18172540,18172884-18173295,
           18173409-18173420,18173943-18174135
          Length = 611

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 20/65 (30%), Positives = 29/65 (44%)
 Frame = +3

Query: 66  KMASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWSGLFAKALEGINVRDL 245
           K+ S+ +    YS  +   + + VT EK +   K     V  YWS L  +     NV D+
Sbjct: 412 KLPSRPDRLSFYSRSL---EMIGVTPEKFAKNNKFWRDQVSMYWSFLGVEKTSIRNVMDM 468

Query: 246 ITNIG 260
             NIG
Sbjct: 469 NANIG 473


>08_02_1595 -
           28114751-28114858,28115018-28115283,28116609-28116703,
           28117179-28118154,28118245-28118369,28118443-28118569,
           28118606-28118843
          Length = 644

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = -1

Query: 271 PTPDPMLVIKSRTLMP-SKAFANRPD 197
           PTP P    +S TL+P S A  NR D
Sbjct: 213 PTPQPQQQAQSATLLPSSSASTNRED 238


>08_01_0977 - 9839362-9839524,9839656-9839744
          Length = 83

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = +3

Query: 111 ILVDDDVAVTGEKISTILKAAAVDVEPYWSG 203
           IL  +  A  GE  ST  + AAVDVEP   G
Sbjct: 44  ILNREAAAAAGEAGSTTREEAAVDVEPGGGG 74


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,811,136
Number of Sequences: 37544
Number of extensions: 145919
Number of successful extensions: 302
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 302
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)