Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_M22
         (324 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    29   0.13 
SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr...    28   0.30 
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch...    27   0.53 
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    27   0.70 
SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces po...    27   0.93 
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p...    26   1.2  
SPAP27G11.13c |nop10||small nucleolar ribonucleoprotein Nop10|Sc...    26   1.6  
SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|c...    25   3.7  
SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase |Schi...    25   3.7  
SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|ch...    24   4.9  
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ...    24   4.9  
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc...    24   4.9  
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ...    24   6.5  
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    24   6.5  
SPCC13B11.01 |adh1|adh|alcohol dehydrogenase Adh1|Schizosaccharo...    24   6.5  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    23   8.6  
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    23   8.6  
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    23   8.6  
SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    23   8.6  

>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 29.5 bits (63), Expect = 0.13
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -2

Query: 251 FGIVLHKVLIR-LPTWFRNVDNFIFYVF 171
           F +V+ KV +  LPTW R+V   ++Y+F
Sbjct: 404 FLVVITKVPLHFLPTWLRHVSRIVYYMF 431


>SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting
           protein homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 455

 Score = 28.3 bits (60), Expect = 0.30
 Identities = 15/58 (25%), Positives = 32/58 (55%)
 Frame = +3

Query: 123 KEVKKRQQRVLMILDSKNIKYEVIDISEPGRETDKDFMQNNSKSNGGTVSDPNPRSPL 296
           K+ KK+++ + + L  K +  +  + S    + D+D + N +K  G + S  NP++P+
Sbjct: 354 KKEKKKKKVLSISLSGKKVVVDQKEASSESSDEDQDELDNLTKVEGQSHSH-NPKAPV 410


>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
           Nak1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 27.5 bits (58), Expect = 0.53
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
 Frame = +3

Query: 162 LDSKNI--KYEVIDISEPGRETDKDFMQNNSKSNGGTVSDPNPRSPLP 299
           LDS N+  K   I      +  D D     ++SN  T SD + + PLP
Sbjct: 416 LDSSNLSSKKSTIQSKHTKQAEDYDLFVGRTRSNSKTSSDQSIKRPLP 463


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 27.1 bits (57), Expect = 0.70
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 222 DKDFMQNNSKSNGGTVSDPNPRSP 293
           D++++ NNS  N G++ + N R P
Sbjct: 46  DQNYLLNNSNKNKGSIIEENTRKP 69


>SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 26.6 bits (56), Expect = 0.93
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -3

Query: 112 IPLIYILTTIIVGLFC 65
           + +IY+ TTI+VG +C
Sbjct: 310 VTIIYLFTTIVVGFYC 325


>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 647

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 24/86 (27%), Positives = 44/86 (51%)
 Frame = +3

Query: 45  VYNFSSLQNKPTIMVVKIYISGISGNKEVKKRQQRVLMILDSKNIKYEVIDISEPGRETD 224
           + N S+L+ K T    KI I+   G    K+   R  M+ +++  KY+  D +E GR   
Sbjct: 483 ILNVSALE-KGTGKTQKITITNDKGRLS-KEEIDR--MVAEAE--KYKAEDEAESGRIQA 536

Query: 225 KDFMQNNSKSNGGTVSDPNPRSPLPA 302
           K+ +++ + S   ++ DPN +  + A
Sbjct: 537 KNHLESYAYSLRNSLDDPNLKDKVDA 562


>SPAP27G11.13c |nop10||small nucleolar ribonucleoprotein
           Nop10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 64

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 184 MKLSTFRNQVGRRIRTLCKTIPNRMVVLSAIPTR 285
           M L  + N  G+R+ TL K  P+  V  S+ P R
Sbjct: 1   MHLMYYLNDEGKRVYTLKKVSPDGRVTKSSHPAR 34


>SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 271

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 324 ILLRCTFEPVVEIAGWDR 271
           +  RC   P+ E AGW R
Sbjct: 128 LTFRCCIVPICEAAGWSR 145


>SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 506

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 9/20 (45%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = -2

Query: 98  YFNNHNCWFVL*T-RKIINN 42
           YFN +N WF L + ++++NN
Sbjct: 321 YFNTNNLWFHLPSVKRVVNN 340


>SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = +3

Query: 171 KNIKYEVIDISEPGRETDKDFMQNNSKSNGGTVSDPNPRSPLPAQM 308
           ++++YE I  +EP   T K   QN      G   +  P  P   Q+
Sbjct: 133 ESVQYEEIVFNEPFEYTYKLLSQNPIGDGHGLAVESEPDHPFSQQL 178


>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
           Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 868

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
 Frame = +3

Query: 45  VYNFSSLQNKP---TIMVVKIYISGISGNKEVKKRQQR 149
           V NFSSL ++    TI ++   +SG  G++  KK+++R
Sbjct: 828 VPNFSSLYSESSSQTIPIMSQVVSGKYGSRPSKKKKKR 865


>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 358

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 16  PISELFSPTLFIIFLVYKTN 75
           P SELF PT+ +  LVY+++
Sbjct: 240 PKSELFFPTILLYPLVYQSD 259


>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 644

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 22/86 (25%), Positives = 41/86 (47%)
 Frame = +3

Query: 45  VYNFSSLQNKPTIMVVKIYISGISGNKEVKKRQQRVLMILDSKNIKYEVIDISEPGRETD 224
           + N S+L+ K T    KI I+   G    ++  + V     S+  KY+  D +E  R   
Sbjct: 483 ILNVSALE-KGTGKTQKITITNDKGRLSKEEIDRMV-----SEAEKYKAEDEAETSRIQA 536

Query: 225 KDFMQNNSKSNGGTVSDPNPRSPLPA 302
           K+ +++ + S   ++ DPN +  + A
Sbjct: 537 KNHLESYAYSLRNSLDDPNLKDKVDA 562


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 3/71 (4%)
 Frame = +3

Query: 114 SGNKEVKKRQQRVLMILDSKNIKYEVIDISEPGRETDKDFMQN---NSKSNGGTVSDPNP 284
           SGN      +   + + D+ N+   + DI  PG  T    + +     KS     S P+ 
Sbjct: 366 SGNLSRTGSESSAVSLSDTTNLNTPISDIPSPGSSTTCSNLSSPHIKRKSRSPPQSLPST 425

Query: 285 RSPLPAQMCNG 317
             P  +   NG
Sbjct: 426 PFPTSSSSTNG 436


>SPCC13B11.01 |adh1|adh|alcohol dehydrogenase
           Adh1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 350

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = +3

Query: 171 KNIKYEVIDISEPGRETDKDFMQNNSKSNGGTVSDPNPRS---PLPAQM 308
           +N+K+E + ++EPG    +D +  N K  G   +D +      PLPA+M
Sbjct: 19  ENVKFEEVPVAEPG----QDEVLVNIKYTGVCHTDLHALQGDWPLPAKM 63


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 252 SNGGTVSDPNPRSPLPAQM 308
           S GG++  P PR PLP+ +
Sbjct: 162 SPGGSLVHPLPRPPLPSSV 180


>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 218 LPTWFRNVDNFIFYVF 171
           L TW  N++N + YVF
Sbjct: 392 LATWHENINNNVKYVF 407


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 110 TADIYFNNHNCWFVL*TRKIINNVGENNSEI 18
           T ++ F++    FV+ TRK   N  ENNS I
Sbjct: 266 TFELLFSSFGLVFVVYTRKNGENGLENNSSI 296


>SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 85

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 51  NFSSLQNKPTIMVVKIYISGISGN 122
           NFS  +NK  +++V + I G S N
Sbjct: 49  NFSLRENKNYLIIVYLPIEGFSAN 72


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,447,145
Number of Sequences: 5004
Number of extensions: 28781
Number of successful extensions: 90
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)