Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_M22
(324 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0055 - 415666-415767,416510-416602,416776-416850,416920-41... 30 0.36
04_04_1390 - 33184233-33184478,33184601-33184705,33184783-331848... 29 0.84
09_04_0543 - 18442571-18443111,18443232-18443426,18443507-184440... 29 1.1
03_02_1035 - 13557425-13557721,13557855-13558058,13558143-135583... 28 1.5
10_07_0080 - 12704866-12705224,12705389-12705512,12705905-127060... 27 2.6
04_04_0149 - 23123020-23123034,23123100-23123143,23123916-231239... 27 3.4
02_02_0710 + 13173074-13173187,13173495-13173590,13174624-13174911 27 3.4
09_04_0594 - 18831011-18831360,18831562-18832111,18832364-188334... 26 5.9
03_05_0598 + 26006027-26006746,26007992-26008094,26008847-26012394 26 5.9
08_02_0362 - 16230672-16230994,16231120-16231164,16231999-162320... 26 7.8
02_02_0707 + 13144147-13144788,13145115-13148663 26 7.8
>01_01_0055 -
415666-415767,416510-416602,416776-416850,416920-417071,
417147-417267,417567-418289,418408-418489,418575-418681,
418757-418822,418941-419057,419157-419402
Length = 627
Score = 30.3 bits (65), Expect = 0.36
Identities = 13/47 (27%), Positives = 28/47 (59%)
Frame = +3
Query: 90 VKIYISGISGNKEVKKRQQRVLMILDSKNIKYEVIDISEPGRETDKD 230
+K++ISG+ NKE + V + + N++ + ++ PG+ +D+D
Sbjct: 361 MKLFISGVVHNKEDAGAKSYVRVPAEINNLEKDSFELYIPGKGSDRD 407
>04_04_1390 -
33184233-33184478,33184601-33184705,33184783-33184890,
33184967-33185101,33185263-33185363,33185495-33185564,
33185642-33185758,33186001-33186138,33186371-33186439,
33186556-33186645,33186758-33186940,33187020-33187052
Length = 464
Score = 29.1 bits (62), Expect = 0.84
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 225 KDFMQNNSKSNGGTVSDPNPRS 290
KDF+ N K G +VSDP RS
Sbjct: 33 KDFLARNDKKFGASVSDPKKRS 54
>09_04_0543 -
18442571-18443111,18443232-18443426,18443507-18444045,
18444205-18444375,18444794-18445219
Length = 623
Score = 28.7 bits (61), Expect = 1.1
Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 2/93 (2%)
Frame = +3
Query: 51 NFSSLQNKPTIMVVKIYISGISGNKE-VKKRQQRVLMILDSKNIKYEVIDISEPGRETDK 227
NFS+ + P +S I + ++ V I D KNIK + D S G
Sbjct: 193 NFSAAEKGPNACHQNQSLSNIHQRESSLQSSFTAVKDITDEKNIKTKTSD-SMFGDNHSS 251
Query: 228 DFMQNNSKSNG-GTVSDPNPRSPLPAQMCNGEE 323
D + + NG ++ PN RS +P N E
Sbjct: 252 DEQDDETNQNGENSMPPPNHRSGVPLSHTNDPE 284
>03_02_1035 -
13557425-13557721,13557855-13558058,13558143-13558332,
13558450-13558841,13558931-13559023,13559297-13559500,
13559572-13559635,13559760-13559806,13559825-13559971,
13560243-13560335,13560420-13560599,13560993-13561128,
13561216-13561466,13561556-13561669,13561794-13561991,
13562050-13562110,13562921-13563210
Length = 986
Score = 28.3 bits (60), Expect = 1.5
Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Frame = +3
Query: 63 LQNKPTIMV--VKIYISGISGNKEVKKRQQRVLMILDS-KNIKYEVIDISEPGRETDKDF 233
+Q +PTI+ +K++ + VK + +++ L S +NI +++ E E D DF
Sbjct: 398 VQKRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDF 457
Query: 234 MQNNSKSNG 260
++ ++ G
Sbjct: 458 VRKAVRAIG 466
>10_07_0080 -
12704866-12705224,12705389-12705512,12705905-12706041,
12707971-12708106,12710346-12710759
Length = 389
Score = 27.5 bits (58), Expect = 2.6
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = +3
Query: 243 NSKSNGGTVSDPNPRSPLPAQ--MCNGEE 323
+S S+GG+ + NP +PLPA+ CN +
Sbjct: 24 SSHSDGGSAAAKNPGTPLPARPSSCNSND 52
>04_04_0149 -
23123020-23123034,23123100-23123143,23123916-23123937,
23124003-23124068,23125100-23125734,23125966-23126035,
23126150-23126209
Length = 303
Score = 27.1 bits (57), Expect = 3.4
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +3
Query: 192 IDISEPGRETDKDFMQNNSKSNGGTVSDPNPRSPLP 299
I I + G+E ++ N G+++ P+P PLP
Sbjct: 55 IGIVKDGKEAKASTSPTGTEPNAGSMTVPSPHPPLP 90
>02_02_0710 + 13173074-13173187,13173495-13173590,13174624-13174911
Length = 165
Score = 27.1 bits (57), Expect = 3.4
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 33 FTDIVYNFSSLQNKPTIMVVKIYISGISGNKEVKK 137
F D + L +P + VVK+ I G++ N VKK
Sbjct: 78 FIDDAMGNAELDIRPLVEVVKMKIEGVADNTVVKK 112
>09_04_0594 -
18831011-18831360,18831562-18832111,18832364-18833406,
18833496-18833760,18835194-18835340,18835431-18835511,
18835626-18835804,18835935-18836093,18836269-18836398,
18836935-18837094,18837337-18837419,18837865-18837915,
18838035-18838151,18838273-18838359
Length = 1133
Score = 26.2 bits (55), Expect = 5.9
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 290 RSRVGIADSTTIRFGIVLHKVLIR 219
R VG+ADSTT+ +V + +R
Sbjct: 775 REEVGVADSTTVSSAVVTEECTVR 798
>03_05_0598 + 26006027-26006746,26007992-26008094,26008847-26012394
Length = 1456
Score = 26.2 bits (55), Expect = 5.9
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 219 TDKDFMQNNSKSNGGTVSDPNPRSPLPAQMCNGE 320
T++DF++NN NGG+ S L +C E
Sbjct: 720 TEEDFIKNNRNINGGSDLPREMLSELYHSICRNE 753
>08_02_0362 -
16230672-16230994,16231120-16231164,16231999-16232049,
16232489-16232696
Length = 208
Score = 25.8 bits (54), Expect = 7.8
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +3
Query: 246 SKSNGGTVSDPNPRSPL 296
S S+GG V+DP+P P+
Sbjct: 138 SMSSGGLVADPSPEGPI 154
>02_02_0707 + 13144147-13144788,13145115-13148663
Length = 1396
Score = 25.8 bits (54), Expect = 7.8
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 219 TDKDFMQNNSKSNGGTVSDPNPRSPLPAQMCNGE 320
T++DF++NN + NGG S L +C E
Sbjct: 660 TEEDFIKNNRRINGGNDLPREFLSELYYSICRNE 693
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,968,458
Number of Sequences: 37544
Number of extensions: 169595
Number of successful extensions: 483
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 423156300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -