Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_M22
(324 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132876-1|CAB60842.2| 132|Caenorhabditis elegans Hypothetical ... 52 1e-07
Z82264-6|CAB05157.1| 214|Caenorhabditis elegans Hypothetical pr... 31 0.25
Z72512-6|CAD44143.2| 657|Caenorhabditis elegans Hypothetical pr... 31 0.25
U88311-7|AAB42348.1| 1173|Caenorhabditis elegans Lethal protein ... 29 0.58
U85515-1|AAB42081.1| 1173|Caenorhabditis elegans LET-502 protein. 29 0.58
U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical pr... 28 1.3
AF040649-6|AAB95006.1| 1360|Caenorhabditis elegans Hypothetical ... 27 2.3
AF025472-7|AAB71069.1| 1466|Caenorhabditis elegans Hypothetical ... 27 2.3
AC024749-1|AAF60434.1| 1466|Caenorhabditis elegans Hypothetical ... 27 2.3
AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical ... 27 2.3
AC006648-1|AAF39854.1| 1486|Caenorhabditis elegans Hypothetical ... 27 2.3
U40933-9|ABD63229.1| 867|Caenorhabditis elegans Hypothetical pr... 27 4.1
U40933-8|AAA81677.1| 1030|Caenorhabditis elegans Hypothetical pr... 27 4.1
Z81037-9|CAB02749.2| 425|Caenorhabditis elegans Hypothetical pr... 26 5.4
Z83125-5|CAB05622.2| 362|Caenorhabditis elegans Hypothetical pr... 26 7.2
Z81492-3|CAB04030.1| 382|Caenorhabditis elegans Hypothetical pr... 26 7.2
Z81463-8|CAB03849.2| 346|Caenorhabditis elegans Hypothetical pr... 26 7.2
AY383563-2|AAQ96594.1| 533|Caenorhabditis elegans excitatory GA... 26 7.2
AY383563-1|AAQ96595.1| 539|Caenorhabditis elegans excitatory GA... 26 7.2
AF098990-1|AAC67448.3| 539|Caenorhabditis elegans Expulsion def... 26 7.2
AF039038-6|AAK21431.2| 629|Caenorhabditis elegans Hypothetical ... 26 7.2
AF003132-1|AAB54133.3| 798|Caenorhabditis elegans Hypothetical ... 26 7.2
U55856-7|AAA98025.1| 249|Caenorhabditis elegans Hypothetical pr... 25 9.5
AF024500-4|AAB70365.1| 335|Caenorhabditis elegans Hypothetical ... 25 9.5
AF000262-9|AAN60529.1| 820|Caenorhabditis elegans Hypothetical ... 25 9.5
AC024811-2|AAF60773.1| 121|Caenorhabditis elegans Hypothetical ... 25 9.5
>AL132876-1|CAB60842.2| 132|Caenorhabditis elegans Hypothetical
protein Y105E8A.1 protein.
Length = 132
Score = 51.6 bits (118), Expect = 1e-07
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Frame = +3
Query: 90 VKIYISGISGNKEVKKRQQRVLMILDSKNIKYEVIDISEPGRETDKDFMQNNSKSNG--G 263
+K+Y++ + N E K R QR LMILD I ++ IDI++P + FM+ N+ G G
Sbjct: 4 LKVYVASATANPETKYRVQRTLMILDGLGIPFDSIDITKPEHAEQRRFMRENASKKGPNG 63
Query: 264 TVSDP 278
V P
Sbjct: 64 AVLPP 68
>Z82264-6|CAB05157.1| 214|Caenorhabditis elegans Hypothetical
protein C49C3.12 protein.
Length = 214
Score = 30.7 bits (66), Expect = 0.25
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3
Query: 99 YISGISGNKEVKKRQQRVLMILDSKNIK 182
++SGI N E + +++ L ILD KNIK
Sbjct: 56 HLSGIESNSEKRYVEEQTLSILDDKNIK 83
>Z72512-6|CAD44143.2| 657|Caenorhabditis elegans Hypothetical
protein R07B5.9 protein.
Length = 657
Score = 30.7 bits (66), Expect = 0.25
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +3
Query: 159 ILDSKNIKYEVIDISEPGRETDKDFMQNNSKSNGGTVSDPNP 284
+LD NI+ E + EPG T + T S+PNP
Sbjct: 22 VLDKSNIREETPEDDEPGPSTKPSGKRQRGNKCNNTESEPNP 63
>U88311-7|AAB42348.1| 1173|Caenorhabditis elegans Lethal protein 502
protein.
Length = 1173
Score = 29.5 bits (63), Expect = 0.58
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +3
Query: 66 QNKPTIMVVKIYISG-ISGNKEVKKRQQRVLMILDSKNIKYEVIDISEPGRETDKDFMQN 242
Q+KP +V + +G SG E K + V M LDSKN ++E++ S E ++N
Sbjct: 417 QHKPQTVVEQPLTNGHASGVPEEK--YEAVKMELDSKNREFELLKDSIARNEIRAKMIEN 474
Query: 243 NSKSNGGTVSD 275
S +SD
Sbjct: 475 EKNSLSTKISD 485
>U85515-1|AAB42081.1| 1173|Caenorhabditis elegans LET-502 protein.
Length = 1173
Score = 29.5 bits (63), Expect = 0.58
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +3
Query: 66 QNKPTIMVVKIYISG-ISGNKEVKKRQQRVLMILDSKNIKYEVIDISEPGRETDKDFMQN 242
Q+KP +V + +G SG E K + V M LDSKN ++E++ S E ++N
Sbjct: 417 QHKPQTVVEQPLTNGHASGVPEEK--YEAVKMELDSKNREFELLKDSIARNEIRAKMIEN 474
Query: 243 NSKSNGGTVSD 275
S +SD
Sbjct: 475 EKNSLSTKISD 485
>U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical protein
B0207.5 protein.
Length = 3279
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +3
Query: 201 SEPGRETDKDFMQNNSKSNGGTVSDPNPRSP 293
S P RE K +GG++SDP PR P
Sbjct: 2576 SRPDREQPNGETTVIKKVSGGSISDPTPRLP 2606
>AF040649-6|AAB95006.1| 1360|Caenorhabditis elegans Hypothetical
protein F33H12.6 protein.
Length = 1360
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/33 (33%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = -3
Query: 298 GSGDRGLGSL-TVPPFDLELFCIKSLSVSLPGS 203
G G R +G + TVPP++ E + ++ L +++ G+
Sbjct: 738 GRGTRQIGRMYTVPPYETERYALRILLLNIKGA 770
>AF025472-7|AAB71069.1| 1466|Caenorhabditis elegans Hypothetical
protein ZK250.9 protein.
Length = 1466
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/33 (33%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = -3
Query: 298 GSGDRGLGSL-TVPPFDLELFCIKSLSVSLPGS 203
G G R +G + TVPP++ E + ++ L +++ G+
Sbjct: 844 GRGTRQIGRMYTVPPYETERYALRILLLNIKGA 876
>AC024749-1|AAF60434.1| 1466|Caenorhabditis elegans Hypothetical
protein Y16E11A.2 protein.
Length = 1466
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/33 (33%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = -3
Query: 298 GSGDRGLGSL-TVPPFDLELFCIKSLSVSLPGS 203
G G R +G + TVPP++ E + ++ L +++ G+
Sbjct: 844 GRGTRQIGRMYTVPPYETERYALRILLLNIKGA 876
>AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical
protein Y46B2A.2 protein.
Length = 1365
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/33 (33%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = -3
Query: 298 GSGDRGLGSL-TVPPFDLELFCIKSLSVSLPGS 203
G G R +G + TVPP++ E + ++ L +++ G+
Sbjct: 774 GRGTRQIGRMYTVPPYETERYALRILLLNIKGA 806
>AC006648-1|AAF39854.1| 1486|Caenorhabditis elegans Hypothetical
protein F59H6.5 protein.
Length = 1486
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/33 (33%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = -3
Query: 298 GSGDRGLGSL-TVPPFDLELFCIKSLSVSLPGS 203
G G R +G + TVPP++ E + ++ L +++ G+
Sbjct: 864 GRGTRQIGRMYTVPPYETERYALRILLLNIKGA 896
>U40933-9|ABD63229.1| 867|Caenorhabditis elegans Hypothetical
protein F20D12.1b protein.
Length = 867
Score = 26.6 bits (56), Expect = 4.1
Identities = 21/87 (24%), Positives = 38/87 (43%)
Frame = -3
Query: 313 LHI*AGSGDRGLGSLTVPPFDLELFCIKSLSVSLPGSEMSITSYFMFFESNIINTRCCLF 134
+HI + S D+ G F +F K+L + S T + +F ++ N CL
Sbjct: 471 MHIGSYSMDQHNGERGSENFLTSVF--KNLVTHPNYRDSSFTPFVLFISDDVPNIHECLK 528
Query: 133 FTSLLPEIPLIYILTTIIVGLFCKLEK 53
F + +IP ++L + + +EK
Sbjct: 529 FEERMSDIPTQHVLLKNVKKMRDNIEK 555
>U40933-8|AAA81677.1| 1030|Caenorhabditis elegans Hypothetical
protein F20D12.1a protein.
Length = 1030
Score = 26.6 bits (56), Expect = 4.1
Identities = 21/87 (24%), Positives = 38/87 (43%)
Frame = -3
Query: 313 LHI*AGSGDRGLGSLTVPPFDLELFCIKSLSVSLPGSEMSITSYFMFFESNIINTRCCLF 134
+HI + S D+ G F +F K+L + S T + +F ++ N CL
Sbjct: 634 MHIGSYSMDQHNGERGSENFLTSVF--KNLVTHPNYRDSSFTPFVLFISDDVPNIHECLK 691
Query: 133 FTSLLPEIPLIYILTTIIVGLFCKLEK 53
F + +IP ++L + + +EK
Sbjct: 692 FEERMSDIPTQHVLLKNVKKMRDNIEK 718
>Z81037-9|CAB02749.2| 425|Caenorhabditis elegans Hypothetical
protein C17E4.1 protein.
Length = 425
Score = 26.2 bits (55), Expect = 5.4
Identities = 18/75 (24%), Positives = 29/75 (38%)
Frame = +3
Query: 60 SLQNKPTIMVVKIYISGISGNKEVKKRQQRVLMILDSKNIKYEVIDISEPGRETDKDFMQ 239
SLQN + I + +G ++K + ++ ILD + +D S GR D
Sbjct: 35 SLQNGQNLFTHYIVLKLKNGQTKIKDKASKMGEILDVSSRASRSVDFSVSGRTKSPD--S 92
Query: 240 NNSKSNGGTVSDPNP 284
T P+P
Sbjct: 93 RKEPETAETAKTPSP 107
>Z83125-5|CAB05622.2| 362|Caenorhabditis elegans Hypothetical
protein T15D6.6 protein.
Length = 362
Score = 25.8 bits (54), Expect = 7.2
Identities = 18/69 (26%), Positives = 31/69 (44%)
Frame = +3
Query: 105 SGISGNKEVKKRQQRVLMILDSKNIKYEVIDISEPGRETDKDFMQNNSKSNGGTVSDPNP 284
S +S NKE +K ++L I +KY + I+ R N KS + +
Sbjct: 138 SSMSPNKEAEKDVSKILKISHGSLLKYYIYQITHDKRNNMNTL---NIKSVEEFLEITSV 194
Query: 285 RSPLPAQMC 311
++ L A++C
Sbjct: 195 QNKLAAELC 203
>Z81492-3|CAB04030.1| 382|Caenorhabditis elegans Hypothetical
protein E03H4.6 protein.
Length = 382
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 105 SGISGNKEVKKRQQRVLMILDSKNIKYEVIDISE 206
S +S NKE +K ++L I + +KY + I++
Sbjct: 178 SSMSPNKEAEKDVSKILKISHGRLLKYYIYQITQ 211
>Z81463-8|CAB03849.2| 346|Caenorhabditis elegans Hypothetical
protein C06B8.6 protein.
Length = 346
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = -1
Query: 165 LISLILVAVFSLPLC 121
L+SL +VA+FS PLC
Sbjct: 26 LLSLHIVAIFSFPLC 40
>AY383563-2|AAQ96594.1| 533|Caenorhabditis elegans excitatory GABA
receptor EXP-1A protein.
Length = 533
Score = 25.8 bits (54), Expect = 7.2
Identities = 17/65 (26%), Positives = 29/65 (44%)
Frame = +3
Query: 129 VKKRQQRVLMILDSKNIKYEVIDISEPGRETDKDFMQNNSKSNGGTVSDPNPRSPLPAQM 308
VK +Q++++ DS N E+ +S R + N ++NGG N +
Sbjct: 388 VKYMRQKIMLTSDSGNSLREMSQMSTRQRLRARKTSNMNFRNNGGGSIPINEEHQQMLTV 447
Query: 309 CNGEE 323
NGE+
Sbjct: 448 PNGED 452
>AY383563-1|AAQ96595.1| 539|Caenorhabditis elegans excitatory GABA
receptor EXP-1B protein.
Length = 539
Score = 25.8 bits (54), Expect = 7.2
Identities = 17/65 (26%), Positives = 29/65 (44%)
Frame = +3
Query: 129 VKKRQQRVLMILDSKNIKYEVIDISEPGRETDKDFMQNNSKSNGGTVSDPNPRSPLPAQM 308
VK +Q++++ DS N E+ +S R + N ++NGG N +
Sbjct: 394 VKYMRQKIMLTSDSGNSLREMSQMSTRQRLRARKTSNMNFRNNGGGSIPINEEHQQMLTV 453
Query: 309 CNGEE 323
NGE+
Sbjct: 454 PNGED 458
>AF098990-1|AAC67448.3| 539|Caenorhabditis elegans Expulsion
defective (defecation)protein 1 protein.
Length = 539
Score = 25.8 bits (54), Expect = 7.2
Identities = 17/65 (26%), Positives = 29/65 (44%)
Frame = +3
Query: 129 VKKRQQRVLMILDSKNIKYEVIDISEPGRETDKDFMQNNSKSNGGTVSDPNPRSPLPAQM 308
VK +Q++++ DS N E+ +S R + N ++NGG N +
Sbjct: 394 VKYMRQKIMLTSDSGNSLREMSQMSTRQRLRARKTSNMNFRNNGGGSIPINEEHQQMLTV 453
Query: 309 CNGEE 323
NGE+
Sbjct: 454 PNGED 458
>AF039038-6|AAK21431.2| 629|Caenorhabditis elegans Hypothetical
protein K06A5.1 protein.
Length = 629
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +3
Query: 114 SGNKEVKKRQQRVLMILDSKNIKYEV 191
S N++ KK+ Q+V + SK++ YE+
Sbjct: 428 SNNEDEKKKNQKVPTRVRSKSVSYEI 453
>AF003132-1|AAB54133.3| 798|Caenorhabditis elegans Hypothetical
protein F37E3.1 protein.
Length = 798
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 135 KRQQRVLMILDSKNIKYEVIDIS 203
K Q++LMIL K +K +VID S
Sbjct: 590 KTNQQMLMILTDKLLKMQVIDCS 612
>U55856-7|AAA98025.1| 249|Caenorhabditis elegans Hypothetical
protein F31E8.1 protein.
Length = 249
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -3
Query: 166 SNIINTRCCLFFTSLLPEIPLIYILTTIIVGLF 68
S +I+TR CLF+T P+ I+ L +I +F
Sbjct: 147 SFVISTRMCLFYTHSNPDF-FIFFLFSISFFIF 178
>AF024500-4|AAB70365.1| 335|Caenorhabditis elegans Hypothetical
protein K06H6.6 protein.
Length = 335
Score = 25.4 bits (53), Expect = 9.5
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = -3
Query: 178 MFFESNIINTRCCLFFTSLLPE 113
++ ++ +NTRCC+F L+ E
Sbjct: 114 LYIKNTKLNTRCCVFVDPLIHE 135
>AF000262-9|AAN60529.1| 820|Caenorhabditis elegans Hypothetical
protein C48E7.8 protein.
Length = 820
Score = 25.4 bits (53), Expect = 9.5
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Frame = -3
Query: 199 MSITS--YFMFFESNI-INTRCCLFFTSLLPEIPLI 101
MS TS YFMF +I + + C FF ++ E+PL+
Sbjct: 688 MSPTSFGYFMFITISIYVLSLVCAFFIAISIEVPLL 723
>AC024811-2|AAF60773.1| 121|Caenorhabditis elegans Hypothetical
protein Y54E10BL.5 protein.
Length = 121
Score = 25.4 bits (53), Expect = 9.5
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Frame = +3
Query: 111 ISGNKEVKK----RQQRVLMILDSKNIKYEVIDISEPGRETDKDFMQN 242
++G+K+ K+ R+QR + LD K K V + EPG+ F N
Sbjct: 71 VTGDKQKKRADAIREQRCKLFLDGKIAKPYVDNHPEPGQFKTDHFQWN 118
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,984,774
Number of Sequences: 27780
Number of extensions: 159733
Number of successful extensions: 483
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 387641448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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