Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_M22
         (324 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    28   0.032
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    22   2.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   2.1  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    22   2.1  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   4.9  
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    20   6.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    20   8.6  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 27.9 bits (59), Expect = 0.032
 Identities = 12/54 (22%), Positives = 28/54 (51%)
 Frame = -3

Query: 256 FDLELFCIKSLSVSLPGSEMSITSYFMFFESNIINTRCCLFFTSLLPEIPLIYI 95
           F L LFC+  +   +P + + + +  +F+E ++      L  TS+L  +  +++
Sbjct: 282 FILHLFCLLDVQWRIPFNGIQMPNLMVFYEKSLALAAFSLMLTSILRYLQELHV 335


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 21.8 bits (44), Expect = 2.1
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = -3

Query: 190 TSYFMFFESNIINTRCCLFFTSLLPEI 110
           T Y   +E NI     CL FT  L  +
Sbjct: 114 TKYLRRYEDNIFLPEDCLLFTIELDRV 140


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 2.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 87  VVKIYISGISGNKEVKK 137
           +V + ISG SGN + K+
Sbjct: 11  IVLVLISGCSGNPDAKR 27


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 2.1
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = -3

Query: 190 TSYFMFFESNIINTRCCLFFTSLLPEI 110
           T Y   +E NI     CL FT  L  +
Sbjct: 129 TKYLRRYEDNIFLPEDCLLFTIELDRV 155


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 20.6 bits (41), Expect = 4.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 180 LCFSNLISLILVAVFSLPLCYQRY 109
           L  S+L+ LIL   F L + +Q+Y
Sbjct: 75  LAVSDLLFLILGLPFELSVFWQQY 98


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 20.2 bits (40), Expect = 6.5
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = +3

Query: 237 QNNSKSNGGTVSDPNPRS 290
           +++ + NGGT  +  PR+
Sbjct: 8   RSDGRGNGGTPEEKRPRT 25


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +3

Query: 240 NNSKSNGGTVSDPNPRSP 293
           NN+  NG T S     SP
Sbjct: 539 NNNSGNGNTNSSARDSSP 556


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,603
Number of Sequences: 438
Number of extensions: 2250
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7093251
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)