Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_M21
(330 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein L17|Sc... 111 3e-26
SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein L17|Sch... 110 6e-26
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 27 0.97
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy... 25 2.2
SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp... 25 3.0
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro... 25 3.9
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 24 6.8
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 24 6.8
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 23 9.0
SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch... 23 9.0
>SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein
L17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 187
Score = 111 bits (267), Expect = 3e-26
Identities = 53/99 (53%), Positives = 64/99 (64%)
Frame = +3
Query: 33 MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKLPLRRAVRYLKNVTEKKECISF 212
M RYS P K KARG+ LR HFKN+ E A I + L++A +L NV E K+ + F
Sbjct: 1 MVRYSASPALETKCAKARGAYLRTHFKNSREVAFTINGMSLKKAFIFLDNVKEHKQAVPF 60
Query: 213 RRFNGGVGRCAQAKQFGTTQGRWPKKSAEFLLQL*RNAE 329
RRFNGGVGR AQ K+FG TQ RWP KS +F L +NAE
Sbjct: 61 RRFNGGVGRTAQGKEFGVTQARWPVKSVKFFYDLLKNAE 99
>SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein
L17|Schizosaccharomyces pombe|chr 3|||Manual
Length = 187
Score = 110 bits (264), Expect = 6e-26
Identities = 53/99 (53%), Positives = 63/99 (63%)
Frame = +3
Query: 33 MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKLPLRRAVRYLKNVTEKKECISF 212
M RYS P K KARG+ LR HFKN+ E A I + L++A +L NV E K+ + F
Sbjct: 1 MVRYSAAPALETKCAKARGAYLRTHFKNSREVAFTINGMNLKKAFIFLDNVKEHKQAVPF 60
Query: 213 RRFNGGVGRCAQAKQFGTTQGRWPKKSAEFLLQL*RNAE 329
RRFNGGVGR AQ K+FG TQ RWP KS F L +NAE
Sbjct: 61 RRFNGGVGRTAQGKEFGVTQARWPVKSVNFFYDLLKNAE 99
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 26.6 bits (56), Expect = 0.97
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +3
Query: 93 NLRVHFKNTYETAMAIRKLPLRRAVRYLKNVTEK-KECIS 209
NLRV K T ++ +++ P + RYLK + E K+C++
Sbjct: 102 NLRVSKKKTSKSDVSMAGFPFFKLDRYLKILVEDLKKCVA 141
>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 25.4 bits (53), Expect = 2.2
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 93 LSHALYMT*QGYPAPESNDPFFISPR 16
+S +++ +GY AP+ DP F PR
Sbjct: 190 VSAEIFVVCRGYKAPKKLDPRFTDPR 215
>SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 361
Score = 25.0 bits (52), Expect = 3.0
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -2
Query: 299 FCRFLGPTTLCGTKLFSLCTTANSTVKTTEGNAFLLFCHIL 177
F L P T+C L S+ + A +++ T F+ F H L
Sbjct: 192 FLSTLTPGTVCRLVLPSILSPAFYSIRATHPQHFIRFIHTL 232
>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 240
Score = 24.6 bits (51), Expect = 3.9
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = +3
Query: 90 SNLRVHFKNTYETAMAIRKLPLRRAVRYLKNVTEKK 197
+N ++ K+ ETA A+RK+ + +R L+ + ++K
Sbjct: 73 TNYKILQKSNDETAQAMRKMQDQARLRDLQKIRQQK 108
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 23.8 bits (49), Expect = 6.8
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 102 VHFKNTYETAMAIRKLPLRRAVRYLKNVTEK 194
VH K+ ETA I+ P R LKN ++K
Sbjct: 327 VHCKSNQETAKHIQNNPRIRINSILKNNSQK 357
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 23.8 bits (49), Expect = 6.8
Identities = 10/39 (25%), Positives = 19/39 (48%)
Frame = +1
Query: 187 QKRRNAFPSVVLTVELAVVHKLNSLVPHRVVGPRNLQNS 303
Q+ R S++ +E H + ++P+ + P NL S
Sbjct: 640 QRHRRQLSSLMHQLEATQPHFVRCIIPNNLKQPHNLDKS 678
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 23.4 bits (48), Expect = 9.0
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +3
Query: 57 DNPAKSCKARGSNLRVHFKN 116
D K C+ + SN + HF+N
Sbjct: 829 DEECKPCQFKKSNFKEHFQN 848
>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 424
Score = 23.4 bits (48), Expect = 9.0
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +3
Query: 60 NPAKSCKARGSNLRVHFKNTYETAMAIRKLP 152
NP C R N KN + M+I+K+P
Sbjct: 206 NPCYVCYDRPPNHFTPIKNEQKKQMSIKKIP 236
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,512,507
Number of Sequences: 5004
Number of extensions: 28600
Number of successful extensions: 53
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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