Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_M21
(330 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0105 - 4337047-4337079,4337175-4337242,4337323-4337425,433... 125 1e-29
08_02_1361 - 26398987-26399019,26399320-26399387,26399458-263995... 112 6e-26
03_01_0427 + 3296717-3296861,3296966-3297210 29 1.2
11_03_0158 + 10911997-10912078,10912203-10912288,10913780-109138... 28 2.0
12_01_0254 + 1885412-1885683,1886123-1886389,1886501-1887077 27 2.7
11_01_0256 + 1969292-1969563,1970004-1970270,1970413-1970989 27 2.7
04_04_1209 + 31755637-31755821,31756017-31756165,31756703-317568... 27 3.6
12_02_0252 - 16439595-16439903 26 6.2
04_01_0206 + 2507827-2508705,2508844-2509902 26 8.3
03_06_0144 - 31969609-31969866,31969961-31970371,31970472-319705... 26 8.3
>09_02_0105 -
4337047-4337079,4337175-4337242,4337323-4337425,
4337507-4337737,4339307-4339347,4339437-4339473,
4339603-4339605
Length = 171
Score = 125 bits (301), Expect = 1e-29
Identities = 63/100 (63%), Positives = 74/100 (74%), Gaps = 1/100 (1%)
Frame = +3
Query: 33 MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKLPLRRAVRYLKNVTEKKECISF 212
M +YSRE +NP KS KA G +LRVHFKNT ETA AIRKLPL +A RYL++V K+ I F
Sbjct: 1 MVKYSREANNPTKSSKAMGRDLRVHFKNTRETAFAIRKLPLGKAKRYLEDVIAHKQAIPF 60
Query: 213 RRFNGGVGRCAQAK-QFGTTQGRWPKKSAEFLLQL*RNAE 329
RR+ GGVGR AQAK + QGRWP KSA F+L L +NAE
Sbjct: 61 RRYCGGVGRTAQAKSRHSNGQGRWPAKSARFILDLLKNAE 100
>08_02_1361 -
26398987-26399019,26399320-26399387,26399458-26399560,
26399658-26399888,26400791-26400826,26400891-26400931,
26401028-26401064,26401158-26401160
Length = 183
Score = 112 bits (270), Expect = 6e-26
Identities = 62/112 (55%), Positives = 73/112 (65%), Gaps = 13/112 (11%)
Frame = +3
Query: 33 MGRYSREPDNPAKSCKARGSNLRVHFK------------NTYETAMAIRKLPLRRAVRYL 176
MG+YS EP NP KS KA G +LRVHFK NT ETA A+RKLPL +A RYL
Sbjct: 1 MGKYSTEPSNPTKSAKAMGRDLRVHFKVIVFARFVQCCSNTRETAFALRKLPLVKAKRYL 60
Query: 177 KNVTEKKECISFRRFNGGVGRCAQAK-QFGTTQGRWPKKSAEFLLQL*RNAE 329
++V K+ I FRR+ GGVGR AQ K + QGRWP KSA F+L L +NAE
Sbjct: 61 EDVIAHKQAIPFRRYCGGVGRTAQVKSRQSNGQGRWPAKSARFILDLLKNAE 112
>03_01_0427 + 3296717-3296861,3296966-3297210
Length = 129
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -3
Query: 274 PCVVPNCLACAQRPTPPLKRRKEM 203
PCV+PNC A A R P L + M
Sbjct: 92 PCVIPNCKASAARLCPLLLSQSHM 115
>11_03_0158 +
10911997-10912078,10912203-10912288,10913780-10913857,
10913967-10914098,10914385-10914435,10914529-10914669,
10914754-10914876,10914989-10915066,10915448-10915541,
10915633-10915739,10915936-10916019,10916649-10916744,
10916835-10917023,10917705-10917780,10918507-10918610,
10918708-10918967,10920000-10920086,10920184-10920411,
10920752-10920826,10921264-10921346,10921552-10921661
Length = 787
Score = 27.9 bits (59), Expect = 2.0
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +3
Query: 21 EK*KMGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKL-PLRRAVRYLKNVTEKK 197
+K + + + + K C RGS +R+H KN T +A + + P RR + + + +
Sbjct: 527 QKHVLAKMAERDEGTLKDCAQRGSFVRLHLKNV-PTEIASKLVHPSRRLPVVVSGLLQHE 585
Query: 198 ECISFRRFN 224
IS F+
Sbjct: 586 SKISVLHFS 594
>12_01_0254 + 1885412-1885683,1886123-1886389,1886501-1887077
Length = 371
Score = 27.5 bits (58), Expect = 2.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 86 WLKPSCSLQEHL*NCHGYKKTASSPCCPLP 175
W++ SCS+ E L +C G K T C P
Sbjct: 81 WVEHSCSVPELLDSCRGSKDTKREQECGRP 110
>11_01_0256 + 1969292-1969563,1970004-1970270,1970413-1970989
Length = 371
Score = 27.5 bits (58), Expect = 2.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 86 WLKPSCSLQEHL*NCHGYKKTASSPCCPLP 175
W++ SCS+ E L +C G K T C P
Sbjct: 81 WVEHSCSVPELLDSCRGSKDTKREQECGRP 110
>04_04_1209 +
31755637-31755821,31756017-31756165,31756703-31756845,
31756902-31757024
Length = 199
Score = 27.1 bits (57), Expect = 3.6
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -3
Query: 250 ACAQRPTPPLKRRKE 206
ACA RP PP+ RR E
Sbjct: 17 ACAARPRPPMDRRSE 31
>12_02_0252 - 16439595-16439903
Length = 102
Score = 26.2 bits (55), Expect = 6.2
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Frame = +3
Query: 183 VTEKKECISFRR---FNGGVGRCAQAKQFGTTQGRWPKKSAEFLLQ 311
V EKKE R GGV AQ GT RW + A +++
Sbjct: 43 VQEKKEVFLAHRGMTIGGGVNEAAQHCSCGTGSWRWARLGATIMVK 88
>04_01_0206 + 2507827-2508705,2508844-2509902
Length = 645
Score = 25.8 bits (54), Expect = 8.3
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 19 GRNKKWVVTLGSRITLLSHVKRVAQTFVFTSRTPMKL 129
GR++KW ++G L +V QT + S+ MKL
Sbjct: 351 GRSRKWSGSIGQFNLLYFRAAQVNQTNYWLSKCAMKL 387
>03_06_0144 -
31969609-31969866,31969961-31970371,31970472-31970542,
31970637-31970723,31970816-31971389
Length = 466
Score = 25.8 bits (54), Expect = 8.3
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -3
Query: 268 VVPNCLACAQRPTPPLKRRKEMH 200
+V CL C+++ P KR+K+ H
Sbjct: 18 LVAACLCCSRKTAPRRKRKKKPH 40
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,443,617
Number of Sequences: 37544
Number of extensions: 215236
Number of successful extensions: 510
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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