Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_M21
(330 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC025721-4|AAK29902.1| 187|Caenorhabditis elegans Ribosomal pro... 143 2e-35
AC025721-5|AAL32251.1| 159|Caenorhabditis elegans Ribosomal pro... 89 5e-19
AF077545-3|AAC26304.1| 396|Caenorhabditis elegans Hypothetical ... 29 1.0
U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of ... 27 2.4
Z82092-2|CAB05011.1| 212|Caenorhabditis elegans Hypothetical pr... 27 4.2
AC024792-6|AAF60686.2| 901|Caenorhabditis elegans Hypothetical ... 27 4.2
Z48638-9|CAA88569.1| 202|Caenorhabditis elegans Hypothetical pr... 26 7.3
U21317-5|AAA62526.2| 895|Caenorhabditis elegans Hypothetical pr... 26 7.3
AL032623-17|CAN86638.1| 1398|Caenorhabditis elegans Hypothetical... 25 9.7
AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical... 25 9.7
>AC025721-4|AAK29902.1| 187|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 17, isoform a protein.
Length = 187
Score = 143 bits (347), Expect = 2e-35
Identities = 65/96 (67%), Positives = 78/96 (81%)
Frame = +3
Query: 42 YSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKLPLRRAVRYLKNVTEKKECISFRRF 221
YSR P+N KSCKARGS+LRVHFKNT+E AMA+R +PLRRA +L +V E KE + FRRF
Sbjct: 6 YSRAPENSTKSCKARGSDLRVHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRF 65
Query: 222 NGGVGRCAQAKQFGTTQGRWPKKSAEFLLQL*RNAE 329
+GG+GR AQ KQ+ TTQGRWP KSA+FLL L +NAE
Sbjct: 66 HGGIGRAAQTKQWNTTQGRWPVKSADFLLDLLKNAE 101
>AC025721-5|AAL32251.1| 159|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 17, isoform b protein.
Length = 159
Score = 89.4 bits (212), Expect = 5e-19
Identities = 40/60 (66%), Positives = 48/60 (80%)
Frame = +3
Query: 42 YSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKLPLRRAVRYLKNVTEKKECISFRRF 221
YSR P+N KSCKARGS+LRVHFKNT+E AMA+R +PLRRA +L +V E KE + FRRF
Sbjct: 6 YSRAPENSTKSCKARGSDLRVHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRF 65
>AF077545-3|AAC26304.1| 396|Caenorhabditis elegans Hypothetical
protein H41C03.1 protein.
Length = 396
Score = 28.7 bits (61), Expect = 1.0
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -1
Query: 309 GAGILQISWANDPVWYQTV*LVH 241
GAG+ +I W N+ W +++ L H
Sbjct: 357 GAGVYKIKWGNEQAWIRSLTLYH 379
>U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of
potassium channelsprotein 2 protein.
Length = 1564
Score = 27.5 bits (58), Expect = 2.4
Identities = 22/90 (24%), Positives = 37/90 (41%)
Frame = +3
Query: 60 NPAKSCKARGSNLRVHFKNTYETAMAIRKLPLRRAVRYLKNVTEKKECISFRRFNGGVGR 239
N +S + G++ H T T K+PL + ++ + K C SF R + +
Sbjct: 1036 NTPRSSISGGTHQTTHTAPTSRTHHDANKVPLNNVYKVIRFYSFWKTCTSFHRIVTMIDK 1095
Query: 240 CAQAKQFGTTQGRWPKKSAEFLLQL*RNAE 329
+ T+ G K F+ L RNA+
Sbjct: 1096 VVD--EPSTSSGGTTFKKRLFVQYLWRNAK 1123
>Z82092-2|CAB05011.1| 212|Caenorhabditis elegans Hypothetical
protein ZK384.2 protein.
Length = 212
Score = 26.6 bits (56), Expect = 4.2
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Frame = +2
Query: 125 NCHG---YKKTASSPCCPLPKECDRKEGMHF 208
N HG YK+ + CP +C+R+ G+ F
Sbjct: 182 NIHGLPIYKEGPTCSACPASTKCERRSGLCF 212
>AC024792-6|AAF60686.2| 901|Caenorhabditis elegans Hypothetical
protein Y48G1A.1 protein.
Length = 901
Score = 26.6 bits (56), Expect = 4.2
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -2
Query: 122 IGVLEVNTKV*ATRFT*LSRVIRLPRVTTHFLFLPGEN 9
+G+L + V R + RVI++ TH +FL EN
Sbjct: 121 LGLLSDGSPVSEPRLVPVPRVIQIEMTNTHTIFLTAEN 158
>Z48638-9|CAA88569.1| 202|Caenorhabditis elegans Hypothetical
protein ZK892.7 protein.
Length = 202
Score = 25.8 bits (54), Expect = 7.3
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 104 SLQEHL*NCHGYKKTASSPCC 166
S+++HL + HGY S CC
Sbjct: 57 SIKKHLQHAHGYVDVQSCSCC 77
>U21317-5|AAA62526.2| 895|Caenorhabditis elegans Hypothetical
protein B0495.7 protein.
Length = 895
Score = 25.8 bits (54), Expect = 7.3
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = -2
Query: 293 RFLGPTTLCGTKLFSLCTTANSTVKTTEGNAFLLFCHIL*VTDSTAKRQFSYSHGSFIGV 114
+FL TLC K+ ++ K GN+ LL CH + D+ + + + V
Sbjct: 139 KFLSSFTLCYHKITNVVVRIGPK-KGPSGNSLLLNCHFDTMPDTPGATDDAVACTIMMDV 197
Query: 113 LEV 105
LEV
Sbjct: 198 LEV 200
>AL032623-17|CAN86638.1| 1398|Caenorhabditis elegans Hypothetical
protein Y43F8B.3b protein.
Length = 1398
Score = 25.4 bits (53), Expect = 9.7
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2
Query: 128 CHGYKKTASSPCCPLPKECDR 190
CH +T ++ CCP P DR
Sbjct: 349 CHVGAQTQTTVCCPKPAAVDR 369
>AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical
protein Y43F8B.3a protein.
Length = 1816
Score = 25.4 bits (53), Expect = 9.7
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2
Query: 128 CHGYKKTASSPCCPLPKECDR 190
CH +T ++ CCP P DR
Sbjct: 349 CHVGAQTQTTVCCPKPAAVDR 369
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,567,090
Number of Sequences: 27780
Number of extensions: 171609
Number of successful extensions: 422
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 397381406
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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