Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_M21
         (330 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    20   6.7  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               20   8.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    20   8.9  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = +2

Query: 140 KKTASSPCCPLPKECDRKEGMH 205
           KK     CC +  +C+  E +H
Sbjct: 459 KKQQGDTCCWVCDQCEEYEYVH 480


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +2

Query: 272 GSLAQEICRIPAPTLE 319
           G++ Q  CR P P +E
Sbjct: 482 GAIQQWTCRQPEPLIE 497


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 57  PAPESNDPFFISPRRK 10
           P P+ ND   +SP R+
Sbjct: 797 PVPQVNDSTILSPVRE 812


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,990
Number of Sequences: 438
Number of extensions: 2288
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7342137
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)