Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_M20
(338 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 153 3e-38
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 153 3e-38
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 153 3e-38
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 153 3e-38
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 129 6e-31
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 85 2e-17
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 85 2e-17
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 76 7e-15
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 40 6e-04
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 38 0.001
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 34 0.023
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 34 0.030
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 34 0.030
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 34 0.030
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 33 0.052
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 33 0.052
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 31 0.16
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 31 0.16
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 29 0.64
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 29 0.64
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 29 1.1
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 1.1
Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical p... 29 1.1
Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical p... 29 1.1
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr... 28 2.0
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr... 28 2.0
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein... 28 2.0
U41994-6|AAK31526.1| 1286|Caenorhabditis elegans Hypothetical pr... 27 3.4
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch... 27 4.5
U58760-5|AAK31464.1| 1076|Caenorhabditis elegans Hypothetical pr... 27 4.5
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch... 27 4.5
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 26 6.0
U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical pr... 26 6.0
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 26 6.0
AL132863-4|CAB60575.1| 410|Caenorhabditis elegans Hypothetical ... 26 7.9
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 153 bits (371), Expect = 3e-38
Identities = 73/77 (94%), Positives = 75/77 (97%)
Frame = +1
Query: 106 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTIERCEKEAQEMGKGSFKYAGVL 285
MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGID+RTIE+ EKEAQEMGKGSFKYA VL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 286 DKLKAERERGITIDIAL 336
DKLKAERERGITIDIAL
Sbjct: 61 DKLKAERERGITIDIAL 77
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 153 bits (371), Expect = 3e-38
Identities = 73/77 (94%), Positives = 75/77 (97%)
Frame = +1
Query: 106 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTIERCEKEAQEMGKGSFKYAGVL 285
MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGID+RTIE+ EKEAQEMGKGSFKYA VL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 286 DKLKAERERGITIDIAL 336
DKLKAERERGITIDIAL
Sbjct: 61 DKLKAERERGITIDIAL 77
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 153 bits (371), Expect = 3e-38
Identities = 73/77 (94%), Positives = 75/77 (97%)
Frame = +1
Query: 106 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTIERCEKEAQEMGKGSFKYAGVL 285
MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGID+RTIE+ EKEAQEMGKGSFKYA VL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 286 DKLKAERERGITIDIAL 336
DKLKAERERGITIDIAL
Sbjct: 61 DKLKAERERGITIDIAL 77
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 153 bits (371), Expect = 3e-38
Identities = 73/77 (94%), Positives = 75/77 (97%)
Frame = +1
Query: 106 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTIERCEKEAQEMGKGSFKYAGVL 285
MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGID+RTIE+ EKEAQEMGKGSFKYA VL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 286 DKLKAERERGITIDIAL 336
DKLKAERERGITIDIAL
Sbjct: 61 DKLKAERERGITIDIAL 77
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 129 bits (311), Expect = 6e-31
Identities = 60/67 (89%), Positives = 63/67 (94%)
Frame = +1
Query: 106 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTIERCEKEAQEMGKGSFKYAGVL 285
MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGID+RTIE+ EKEAQEMGKGSFKYA VL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 286 DKLKAER 306
DKLK +
Sbjct: 61 DKLKVTK 67
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 84.6 bits (200), Expect = 2e-17
Identities = 38/72 (52%), Positives = 53/72 (73%)
Frame = +1
Query: 115 EKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTIERCEKEAQEMGKGSFKYAGVLDKL 294
+K IN++V+GHVD+GKST GHL++ +D RTI++ + EA GK SF YA VLD+
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 226
Query: 295 KAERERGITIDI 330
+ ERERG+T+DI
Sbjct: 227 EEERERGVTMDI 238
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 84.6 bits (200), Expect = 2e-17
Identities = 38/72 (52%), Positives = 53/72 (73%)
Frame = +1
Query: 115 EKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTIERCEKEAQEMGKGSFKYAGVLDKL 294
+K IN++V+GHVD+GKST GHL++ +D RTI++ + EA GK SF YA VLD+
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 244
Query: 295 KAERERGITIDI 330
+ ERERG+T+DI
Sbjct: 245 EEERERGVTMDI 256
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 75.8 bits (178), Expect = 7e-15
Identities = 33/74 (44%), Positives = 52/74 (70%)
Frame = +1
Query: 109 GKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTIERCEKEAQEMGKGSFKYAGVLD 288
G K HIN+V +GHVD+GKST G L++ G +D+RT+E+ E+EA+E G+ S+ + +D
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMD 163
Query: 289 KLKAERERGITIDI 330
ERE+G T+++
Sbjct: 164 TNDEEREKGKTVEV 177
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 39.5 bits (88), Expect = 6e-04
Identities = 29/68 (42%), Positives = 35/68 (51%)
Frame = +1
Query: 130 NIVVIGHVDSGKSTTTGHLIYKCGGIDERTIERCEKEAQEMGKGSFKYAGVLDKLKAERE 309
NI VI HVD+GK+T T L+Y G I A + KG+ V D L ERE
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAI---------HVAGHVDKGN----TVTDFLDIERE 73
Query: 310 RGITIDIA 333
RGIT+ A
Sbjct: 74 RGITVQSA 81
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 38.3 bits (85), Expect = 0.001
Identities = 23/68 (33%), Positives = 33/68 (48%)
Frame = +1
Query: 130 NIVVIGHVDSGKSTTTGHLIYKCGGIDERTIERCEKEAQEMGKGSFKYAGVLDKLKAERE 309
NI + H+DSGK+T T ++Y G ID + +G +D + ER+
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRID----------SMHEVRGKDDVGATMDFMDLERQ 95
Query: 310 RGITIDIA 333
RGITI A
Sbjct: 96 RGITIQSA 103
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 34.3 bits (75), Expect = 0.023
Identities = 23/65 (35%), Positives = 32/65 (49%)
Frame = +1
Query: 130 NIVVIGHVDSGKSTTTGHLIYKCGGIDERTIERCEKEAQEMGKGSFKYAGVLDKLKAERE 309
N ++ HVD GKST L+ CG + +K+ +LDKL+ ERE
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPG-----QKQ-------------MLDKLQVERE 85
Query: 310 RGITI 324
RGIT+
Sbjct: 86 RGITV 90
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 33.9 bits (74), Expect = 0.030
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +1
Query: 112 KEKVHINIVVIGHVDSGKSTTTG---HLIYKCGGIDERTIERCEKEAQEMGKG 261
++K H+N+ IGHVD GK+T T ++ G R E + +E +G
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARG 97
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 33.9 bits (74), Expect = 0.030
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +1
Query: 112 KEKVHINIVVIGHVDSGKSTTTG---HLIYKCGGIDERTIERCEKEAQEMGKG 261
++K H+N+ IGHVD GK+T T ++ G R E + +E +G
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARG 98
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 33.9 bits (74), Expect = 0.030
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +1
Query: 112 KEKVHINIVVIGHVDSGKSTTTG---HLIYKCGGIDERTIERCEKEAQEMGKG 261
++K H+N+ IGHVD GK+T T ++ G R E + +E +G
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARG 98
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 33.1 bits (72), Expect = 0.052
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +1
Query: 118 KVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTIERCEKEAQEMGKGSFKYA--GVLDK 291
K+++N+ IGH+D GK+T T I R + + KG K+ +DK
Sbjct: 43 KINVNVGTIGHIDHGKTTLTS------------AITRVQAK-----KGFAKHIKFDEIDK 85
Query: 292 LKAERERGITIDIA 333
K E++RGITI++A
Sbjct: 86 GKEEKKRGITINVA 99
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 33.1 bits (72), Expect = 0.052
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +1
Query: 118 KVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTIERCEKEAQEMGKGSFKYA--GVLDK 291
K+++N+ IGH+D GK+T T I R + + KG K+ +DK
Sbjct: 43 KINVNVGTIGHIDHGKTTLTS------------AITRVQAK-----KGFAKHIKFDEIDK 85
Query: 292 LKAERERGITIDIA 333
K E++RGITI++A
Sbjct: 86 GKEEKKRGITINVA 99
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 31.5 bits (68), Expect = 0.16
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +1
Query: 130 NIVVIGHVDSGKSTTTGHLIYKCG 201
N+ VI HVD GKST T L+ K G
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVSKAG 44
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 31.5 bits (68), Expect = 0.16
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +1
Query: 130 NIVVIGHVDSGKSTTTGHLIYKCG 201
N+ VI HVD GKST T L+ K G
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVSKAG 44
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 29.5 bits (63), Expect = 0.64
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 100 PKMGKEKVHINIVVIGHVDSGKSTTTGHLIY 192
P K+ + + V+G+VD+GKST G L +
Sbjct: 132 PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 29.5 bits (63), Expect = 0.64
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 100 PKMGKEKVHINIVVIGHVDSGKSTTTGHLIY 192
P K+ + + V+G+VD+GKST G L +
Sbjct: 132 PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 28.7 bits (61), Expect = 1.1
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +1
Query: 127 INIVVIGHVDSGKSTTT 177
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 1.1
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +1
Query: 127 INIVVIGHVDSGKSTTT 177
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical
protein F54D5.5b protein.
Length = 492
Score = 28.7 bits (61), Expect = 1.1
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 208 DERTIERCEKEAQEMGKGSFKYAGVLDKLKAERE 309
++R ++ EKE + F Y LDK+K ER+
Sbjct: 272 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 305
>Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical
protein F54D5.5a protein.
Length = 427
Score = 28.7 bits (61), Expect = 1.1
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 208 DERTIERCEKEAQEMGKGSFKYAGVLDKLKAERE 309
++R ++ EKE + F Y LDK+K ER+
Sbjct: 207 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 240
>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 27.9 bits (59), Expect = 2.0
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +1
Query: 100 PKMGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGG--IDERTIERCEKEAQEMGK 258
PK +EK+ I + +V+ G TTG +CGG ++ R + R AQE K
Sbjct: 1299 PKGFEEKLEKVITTLSNVEMGLDDTTGIDGSECGGALMEVRALVRMLDGAQEKWK 1353
>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 27.9 bits (59), Expect = 2.0
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +1
Query: 100 PKMGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGG--IDERTIERCEKEAQEMGK 258
PK +EK+ I + +V+ G TTG +CGG ++ R + R AQE K
Sbjct: 1299 PKGFEEKLEKVITTLSNVEMGLDDTTGIDGSECGGALMEVRALVRMLDGAQEKWK 1353
>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
protein.
Length = 3674
Score = 27.9 bits (59), Expect = 2.0
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +1
Query: 100 PKMGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGG--IDERTIERCEKEAQEMGK 258
PK +EK+ I + +V+ G TTG +CGG ++ R + R AQE K
Sbjct: 1299 PKGFEEKLEKVITTLSNVEMGLDDTTGIDGSECGGALMEVRALVRMLDGAQEKWK 1353
>U41994-6|AAK31526.1| 1286|Caenorhabditis elegans Hypothetical
protein F59A6.5 protein.
Length = 1286
Score = 27.1 bits (57), Expect = 3.4
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -1
Query: 308 SRSAFSLSNTPAYLKEPLPISWASFSHLSMV 216
S+SA LSN ++ +P W +F H+ ++
Sbjct: 739 SQSASELSNRQGTMRHDIPHKWKAFRHVGVL 769
>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
protein 1 protein.
Length = 4568
Score = 26.6 bits (56), Expect = 4.5
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -1
Query: 89 LLDSLFHFTKLFLQTLTTD 33
L SL HF+K+ +QT+TTD
Sbjct: 1683 LAASLTHFSKMNIQTMTTD 1701
>U58760-5|AAK31464.1| 1076|Caenorhabditis elegans Hypothetical
protein C27A2.1 protein.
Length = 1076
Score = 26.6 bits (56), Expect = 4.5
Identities = 15/60 (25%), Positives = 33/60 (55%)
Frame = +1
Query: 136 VVIGHVDSGKSTTTGHLIYKCGGIDERTIERCEKEAQEMGKGSFKYAGVLDKLKAERERG 315
+++GH SGKS+ + CGG +++ R E+ + + G + G ++ A++++G
Sbjct: 46 MILGHNGSGKSSIICGICLACGG-SPKSLGRSERIVEYIRHGCTE--GYVEIAIADKQKG 102
>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
protein.
Length = 4568
Score = 26.6 bits (56), Expect = 4.5
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -1
Query: 89 LLDSLFHFTKLFLQTLTTD 33
L SL HF+K+ +QT+TTD
Sbjct: 1683 LAASLTHFSKMNIQTMTTD 1701
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
F29D11.1 protein.
Length = 4753
Score = 26.2 bits (55), Expect = 6.0
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +1
Query: 196 CGGIDERTIERCEKEAQEMGKGSFK 270
C G ++ + E C+ E +E KG F+
Sbjct: 3082 CAGGEDESTELCKTEKKECNKGEFR 3106
>U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical protein
F45E4.4 protein.
Length = 2361
Score = 26.2 bits (55), Expect = 6.0
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = +1
Query: 130 NIVVIGHVDSGKSTTTGHLIYKCGGIDERTIERCEKEAQEMGKGSFKYAGVLDKLKAERE 309
+I+ GH+D S GH +K GI E E E ++ + + +G ERE
Sbjct: 1633 SIIPSGHIDQPISLPRGHTGFKPAGIVNED-ELFETERKQREESPTRESGYATSTSYERE 1691
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
protein protein.
Length = 4753
Score = 26.2 bits (55), Expect = 6.0
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +1
Query: 196 CGGIDERTIERCEKEAQEMGKGSFK 270
C G ++ + E C+ E +E KG F+
Sbjct: 3082 CAGGEDESTELCKTEKKECNKGEFR 3106
>AL132863-4|CAB60575.1| 410|Caenorhabditis elegans Hypothetical
protein Y37H2A.6 protein.
Length = 410
Score = 25.8 bits (54), Expect = 7.9
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +1
Query: 103 KMGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTIE 225
K+GK K+ + ++ D GKS +L + C + + +E
Sbjct: 16 KLGKNKIFLRACILYEYDQGKSVYESYLSF-CDAVGDDFME 55
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,481,235
Number of Sequences: 27780
Number of extensions: 138253
Number of successful extensions: 484
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 429601520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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