Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_M20
         (338 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   153   7e-40
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   153   7e-40
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    40   8e-06
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    25   0.33 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   0.43 
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    21   4.1  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    21   4.1  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    21   4.1  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    21   4.1  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   4.1  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    21   4.1  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    20   7.1  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     20   7.1  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                20   9.4  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  153 bits (370), Expect = 7e-40
 Identities = 72/77 (93%), Positives = 75/77 (97%)
 Frame = +1

Query: 106 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTIERCEKEAQEMGKGSFKYAGVL 285
           MGKEK+HINIVVIGHVDSGKSTTTGHLIYKCGGID+RTIE+ EKEAQEMGKGSFKYA VL
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60

Query: 286 DKLKAERERGITIDIAL 336
           DKLKAERERGITIDIAL
Sbjct: 61  DKLKAERERGITIDIAL 77


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  153 bits (370), Expect = 7e-40
 Identities = 72/77 (93%), Positives = 75/77 (97%)
 Frame = +1

Query: 106 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTIERCEKEAQEMGKGSFKYAGVL 285
           MGKEK+HINIVVIGHVDSGKSTTTGHLIYKCGGID+RTIE+ EKEAQEMGKGSFKYA VL
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60

Query: 286 DKLKAERERGITIDIAL 336
           DKLKAERERGITIDIAL
Sbjct: 61  DKLKAERERGITIDIAL 77


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 39.9 bits (89), Expect = 8e-06
 Identities = 19/19 (100%), Positives = 19/19 (100%)
 Frame = +1

Query: 280 VLDKLKAERERGITIDIAL 336
           VLDKLKAERERGITIDIAL
Sbjct: 2   VLDKLKAERERGITIDIAL 20


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 24.6 bits (51), Expect = 0.33
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 118 KVHINIVVIGHVDSGKST 171
           K H  + ++GHVD GK+T
Sbjct: 143 KRHPIVTIMGHVDHGKTT 160


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 0.43
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = +1

Query: 127 INIVVIGHVDSGKST 171
           INI  IGHV  GKST
Sbjct: 43  INIGTIGHVAHGKST 57


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -2

Query: 235 SRTFRWYVRRYHRICRSSDQLL 170
           +R +R   R+Y ++C   ++LL
Sbjct: 9   NREYRKKDRQYEKLCNEEEKLL 30


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -2

Query: 235 SRTFRWYVRRYHRICRSSDQLL 170
           +R +R   R+Y ++C   ++LL
Sbjct: 9   NREYRKKDRQYEKLCNEEEKLL 30


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -2

Query: 235 SRTFRWYVRRYHRICRSSDQLL 170
           +R +R   R+Y ++C   ++LL
Sbjct: 9   NREYRKKDRQYEKLCNEEEKLL 30


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -2

Query: 235 SRTFRWYVRRYHRICRSSDQLL 170
           +R +R   R+Y ++C   ++LL
Sbjct: 9   NREYRKKDRQYEKLCNEEEKLL 30


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = -2

Query: 223 RWYVRRYHRIC 191
           RW + ++HR+C
Sbjct: 186 RWDLGKFHRVC 196


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 282 YPSVLEGTLTHFLG 241
           YPS+ +GT ++ LG
Sbjct: 25  YPSIRQGTTSYCLG 38


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 9/44 (20%), Positives = 23/44 (52%)
 Frame = -1

Query: 323 MVIPRSRSAFSLSNTPAYLKEPLPISWASFSHLSMVRSSIPPHL 192
           +V+  +  + + +N     K P P  ++    L++V +S+P ++
Sbjct: 615 VVVEETIPSLNSTNVTLSTKCPYPSYYSYIGVLTLVATSMPTYI 658


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 258 GFLQVRWGIGQT 293
           GFL+ RW I  T
Sbjct: 161 GFLRTRWSISGT 172


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 2   HEARILHADCNP 37
           H A I+HAD  P
Sbjct: 172 HNAGIVHADVKP 183


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,281
Number of Sequences: 438
Number of extensions: 1928
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7715466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)