Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_M19
         (113 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S...    32   0.009
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|...    31   0.026
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    24   2.3  
SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyce...    24   3.0  
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    23   5.3  
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    23   7.0  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    22   9.3  

>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score = 32.3 bits (70), Expect = 0.009
 Identities = 10/13 (76%), Positives = 13/13 (100%)
 Frame = +3

Query: 75  IVDPFTRKDWYDV 113
           +VDPF+RKDWYD+
Sbjct: 20  VVDPFSRKDWYDI 32


>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score = 30.7 bits (66), Expect = 0.026
 Identities = 9/13 (69%), Positives = 13/13 (100%)
 Frame = +3

Query: 75  IVDPFTRKDWYDV 113
           +VDPF+RK+WYD+
Sbjct: 20  VVDPFSRKEWYDI 32


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -3

Query: 45  SKGLYFYRPP 16
           S+GLYFY PP
Sbjct: 137 SRGLYFYHPP 146


>SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 113 NIVPVFTGERINNLLLNTLLASFRKAFIFTD 21
           N+V VF G+ + N  LN  +  +    +FT+
Sbjct: 175 NVVKVFQGKNVKNDSLNLRVRVWITGIVFTE 205


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 86  RINNLLLNTLLASFRKAFIFTDR 18
           +I  LLL  L+  FRK+F   D+
Sbjct: 189 QIGELLLTRLIVQFRKSFQRNDK 211


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 65  NTLLASFRKAFIFTDRHDQ 9
           NT+LAS  KAF   D  ++
Sbjct: 330 NTMLASLSKAFFIFDNQNE 348


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1666

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -1

Query: 101 VFTGERINNLLLNTLLASFRKAFIFTDRHD 12
           V+  E++ NLL    LA      +  DR+D
Sbjct: 750 VYNPEKVKNLLKEAKLADQLPLILVCDRYD 779


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 339,045
Number of Sequences: 5004
Number of extensions: 2892
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 2,362,478
effective HSP length: 19
effective length of database: 2,267,402
effective search space used: 40813236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)