Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_M19
         (113 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221...    30   0.30 
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120...    29   0.40 
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524...    29   0.40 

>02_02_0482 -
           10819562-10819813,10820773-10820952,10822073-10822150,
           10823056-10823256,10823365-10823550,10823646-10823783,
           10824396-10824501,10824634-10824692
          Length = 399

 Score = 29.9 bits (64), Expect = 0.30
 Identities = 9/12 (75%), Positives = 12/12 (100%)
 Frame = +3

Query: 78  VDPFTRKDWYDV 113
           VDPF++KDWYD+
Sbjct: 21  VDPFSKKDWYDI 32


>12_02_0012 -
           12309332-12310228,12311087-12311669,12311945-12312051,
           12313190-12313237,12315139-12315216,12315300-12315500,
           12315612-12315797,12315870-12316007,12318311-12318416,
           12318529-12318587
          Length = 800

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = +3

Query: 78  VDPFTRKDWYDV 113
           VDPF +KDWYD+
Sbjct: 21  VDPFAKKDWYDI 32


>03_02_0043 +
           5242496-5242554,5242673-5242778,5243586-5243723,
           5243794-5243979,5244075-5244275,5244362-5244460
          Length = 262

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = +3

Query: 78  VDPFTRKDWYDV 113
           VDPF +KDWYD+
Sbjct: 21  VDPFAKKDWYDI 32


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,187,811
Number of Sequences: 37544
Number of extensions: 19638
Number of successful extensions: 21
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 14,793,348
effective HSP length: 18
effective length of database: 14,117,556
effective search space used: 268233564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)