Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_M18
         (308 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa...    54   4e-09
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac...    54   4e-09
SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr 1...    23   7.9  

>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
           L19B|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 193

 Score = 54.4 bits (125), Expect = 4e-09
 Identities = 22/39 (56%), Positives = 31/39 (79%)
 Frame = -1

Query: 308 YHSLYMKAKGNVFKNKRVLMEYIHRKKPEKARTKMLSDQ 192
           YH+LY++AKGN FK+KR L+E+I R K E  RTK++ +Q
Sbjct: 120 YHTLYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQ 158


>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
           L19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 193

 Score = 54.4 bits (125), Expect = 4e-09
 Identities = 22/39 (56%), Positives = 31/39 (79%)
 Frame = -1

Query: 308 YHSLYMKAKGNVFKNKRVLMEYIHRKKPEKARTKMLSDQ 192
           YH+LY++AKGN FK+KR L+E+I R K E  RTK++ +Q
Sbjct: 120 YHTLYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQ 158


>SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 16  WYLLNHFMFSYKL 54
           W +  HFMFS+K+
Sbjct: 89  WNIAGHFMFSHKI 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 992,931
Number of Sequences: 5004
Number of extensions: 12684
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)