Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_M18
(308 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0125 - 21039767-21039791,21039876-21039922,21040220-210405... 66 5e-12
03_02_0934 - 12513810-12513834,12513918-12513970,12514212-125145... 66 5e-12
07_03_1639 + 28305801-28305958,28306240-28306249 31 0.18
08_01_0843 - 8276619-8278991 29 0.56
02_05_0040 + 25341418-25341810 28 1.3
09_06_0206 - 21580240-21580467,21580544-21580591,21581533-215823... 26 5.2
01_03_0309 - 14886764-14888004,14888237-14888300 26 5.2
12_01_0861 + 8153108-8153266,8154633-8155136 25 9.2
04_03_1013 - 21714804-21714896,21715202-21715241,21715629-217156... 25 9.2
03_01_0642 - 4702726-4703052,4703127-4703193,4703280-4703360,470... 25 9.2
02_05_0143 + 26251401-26253734,26254658-26254810,26254951-26256783 25 9.2
01_01_0082 + 625198-625719 25 9.2
>03_05_0125 -
21039767-21039791,21039876-21039922,21040220-21040533,
21040613-21040735,21041599-21041710
Length = 206
Score = 66.1 bits (154), Expect = 5e-12
Identities = 29/39 (74%), Positives = 32/39 (82%)
Frame = -1
Query: 308 YHSLYMKAKGNVFKNKRVLMEYIHRKKPEKARTKMLSDQ 192
YH +YMK KGN+FKNKRVLME IH+ K EKAR K LSDQ
Sbjct: 120 YHDMYMKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 158
>03_02_0934 -
12513810-12513834,12513918-12513970,12514212-12514525,
12514608-12514730,12515710-12515821
Length = 208
Score = 66.1 bits (154), Expect = 5e-12
Identities = 29/39 (74%), Positives = 32/39 (82%)
Frame = -1
Query: 308 YHSLYMKAKGNVFKNKRVLMEYIHRKKPEKARTKMLSDQ 192
YH +YMK KGN+FKNKRVLME IH+ K EKAR K LSDQ
Sbjct: 120 YHDMYMKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 158
>07_03_1639 + 28305801-28305958,28306240-28306249
Length = 55
Score = 31.1 bits (67), Expect = 0.18
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = -1
Query: 293 MKAKGNVFKNKRVLMEYIHRKKPEKARTKMLSDQ 192
MK KGN+ NKR + + EKAR + LSDQ
Sbjct: 1 MKVKGNMLNNKRGPYGEYPQVQAEKARKRTLSDQ 34
>08_01_0843 - 8276619-8278991
Length = 790
Score = 29.5 bits (63), Expect = 0.56
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 113 IVPPSSRRCAPRGACGLPSPC 175
+VPPS+ RC+ +G CG S C
Sbjct: 286 LVPPSNDRCSVKGVCGPNSFC 306
>02_05_0040 + 25341418-25341810
Length = 130
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +2
Query: 122 PSSRRCAPRGACGLPSPCCGAPLLGH 199
P RR APR C P CGAP H
Sbjct: 92 PQRRRGAPRRRCSGPQLRCGAPRWRH 117
>09_06_0206 -
21580240-21580467,21580544-21580591,21581533-21582321,
21582779-21582979
Length = 421
Score = 26.2 bits (55), Expect = 5.2
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +3
Query: 186 LCLVTKHLGPSLLRLL 233
+CLVT+ LG SLLRL+
Sbjct: 123 VCLVTEFLGDSLLRLI 138
>01_03_0309 - 14886764-14888004,14888237-14888300
Length = 434
Score = 26.2 bits (55), Expect = 5.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -1
Query: 308 YHSLYMKAKGNVFKNKRVLMEYIHRKKP 225
YH+ + AK +V+ +L+E + RKKP
Sbjct: 271 YHTGQLTAKSDVYSFGVILVELLTRKKP 298
>12_01_0861 + 8153108-8153266,8154633-8155136
Length = 220
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Frame = +2
Query: 119 PPSSR-RCAPRGACGLPSPCC 178
PPSS+ R APR PSP C
Sbjct: 85 PPSSQLRAAPRSLLSSPSPHC 105
>04_03_1013 -
21714804-21714896,21715202-21715241,21715629-21715691,
21716381-21716484,21717085-21717187,21717647-21717717,
21718830-21718925,21719174-21719305
Length = 233
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -1
Query: 293 MKAKGNVFKNKRVLMEYIHRKKPEKARTKMLSDQ 192
++ + N+ +N RVL+ HR + E RT+ S +
Sbjct: 143 VQTRRNLVENDRVLLNPAHRAQQEYERTEKCSSR 176
>03_01_0642 -
4702726-4703052,4703127-4703193,4703280-4703360,
4703582-4703718,4703936-4704143,4704664-4704891,
4705310-4705450,4705538-4705794
Length = 481
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +2
Query: 122 PSSRRCAPRGACGLPSPCCGAPLLGH 199
P +CA G C SP G P GH
Sbjct: 6 PEELKCAANGGCAAASP-GGTPRAGH 30
>02_05_0143 + 26251401-26253734,26254658-26254810,26254951-26256783
Length = 1439
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -3
Query: 195 PSRGAPQQGEGSPQAPRGAHRREEG 121
PS GAP G G + P +R +G
Sbjct: 295 PSNGAPSVGRGKGRGPGRGRQRSKG 319
>01_01_0082 + 625198-625719
Length = 173
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 113 IVPPSSRRCAPRGACGLPSPC 175
+V +CA ACGLPSPC
Sbjct: 27 VVVRDDEKCA---ACGLPSPC 44
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,021,210
Number of Sequences: 37544
Number of extensions: 111340
Number of successful extensions: 442
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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