Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_M18
(308 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF002196-4|AAB53979.1| 198|Caenorhabditis elegans Ribosomal pro... 56 4e-09
Z93378-6|CAB07586.1| 1049|Caenorhabditis elegans Hypothetical pr... 29 0.87
Z81457-11|CAB03818.1| 1049|Caenorhabditis elegans Hypothetical p... 29 0.87
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch... 27 3.5
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch... 27 3.5
Z78413-7|CAB01657.1| 352|Caenorhabditis elegans Hypothetical pr... 26 4.7
EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of g... 26 4.7
AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical ... 26 4.7
Z81088-5|CAB03133.1| 215|Caenorhabditis elegans Hypothetical pr... 26 6.2
X74838-1|CAA52832.1| 231|Caenorhabditis elegans cuticlin 2 prot... 26 6.2
U41746-5|AAT81186.1| 492|Caenorhabditis elegans Innexin protein... 26 6.2
U41746-4|AAA83332.1| 559|Caenorhabditis elegans Innexin protein... 26 6.2
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 26 6.2
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 26 6.2
Z81568-1|CAB04594.1| 681|Caenorhabditis elegans Hypothetical pr... 25 8.1
U22831-11|AAL65783.1| 627|Caenorhabditis elegans G-protein-link... 25 8.1
AY053365-1|AAL15153.1| 627|Caenorhabditis elegans G-protein-lin... 25 8.1
>AF002196-4|AAB53979.1| 198|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 19 protein.
Length = 198
Score = 56.4 bits (130), Expect = 4e-09
Identities = 24/39 (61%), Positives = 30/39 (76%)
Frame = -1
Query: 308 YHSLYMKAKGNVFKNKRVLMEYIHRKKPEKARTKMLSDQ 192
YH LY++AKGN FKNK+ L+EYI +KK E R K L+DQ
Sbjct: 120 YHELYLRAKGNNFKNKKNLIEYIFKKKTENKRAKQLADQ 158
>Z93378-6|CAB07586.1| 1049|Caenorhabditis elegans Hypothetical protein
C01G12.8 protein.
Length = 1049
Score = 28.7 bits (61), Expect = 0.87
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 199 LSILVLAFSGFFLWMYSMRTRLFLNTLPFAFMYKE 303
+ L L F+ FF+ +Y R F+ T P ++YKE
Sbjct: 1013 IGFLALPFA-FFIGLYDEVRRYFIRTYPGGYIYKE 1046
>Z81457-11|CAB03818.1| 1049|Caenorhabditis elegans Hypothetical
protein C01G12.8 protein.
Length = 1049
Score = 28.7 bits (61), Expect = 0.87
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 199 LSILVLAFSGFFLWMYSMRTRLFLNTLPFAFMYKE 303
+ L L F+ FF+ +Y R F+ T P ++YKE
Sbjct: 1013 IGFLALPFA-FFIGLYDEVRRYFIRTYPGGYIYKE 1046
>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
protein 1 protein.
Length = 4568
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/39 (28%), Positives = 24/39 (61%)
Frame = +3
Query: 183 RLCLVTKHLGPSLLRLLPVDVLHEDTLVLEHITLRLHVQ 299
RL ++T L ++ R + +LH D ++L + +R+H++
Sbjct: 3797 RLRIITTSLFQTVFRRVSRGMLHTDKVLLALLLMRIHIR 3835
>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
protein.
Length = 4568
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/39 (28%), Positives = 24/39 (61%)
Frame = +3
Query: 183 RLCLVTKHLGPSLLRLLPVDVLHEDTLVLEHITLRLHVQ 299
RL ++T L ++ R + +LH D ++L + +R+H++
Sbjct: 3797 RLRIITTSLFQTVFRRVSRGMLHTDKVLLALLLMRIHIR 3835
>Z78413-7|CAB01657.1| 352|Caenorhabditis elegans Hypothetical
protein T01C3.7 protein.
Length = 352
Score = 26.2 bits (55), Expect = 4.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 189 RGAPQQGEGSPQAPRGAHRREEGG 118
RG+P+ G GSP+ RG GG
Sbjct: 91 RGSPRGGRGSPRGGRGGAGGMRGG 114
>EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of
glp-1 protein.
Length = 1492
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -3
Query: 210 QDA**PSRGAPQQGEGSPQAPR 145
Q A PSRGA G G+P+ PR
Sbjct: 771 QQAYQPSRGAAGAGAGAPRGPR 792
>AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical
protein Y53H1C.2a protein.
Length = 1512
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -3
Query: 210 QDA**PSRGAPQQGEGSPQAPR 145
Q A PSRGA G G+P+ PR
Sbjct: 791 QQAYQPSRGAAGAGAGAPRGPR 812
>Z81088-5|CAB03133.1| 215|Caenorhabditis elegans Hypothetical
protein F53F1.5 protein.
Length = 215
Score = 25.8 bits (54), Expect = 6.2
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +2
Query: 149 GACGLPSPCCGAPL 190
G CG P+PC AP+
Sbjct: 65 GGCGGPAPCAAAPI 78
>X74838-1|CAA52832.1| 231|Caenorhabditis elegans cuticlin 2
protein.
Length = 231
Score = 25.8 bits (54), Expect = 6.2
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +2
Query: 149 GACGLPSPCCGAPL 190
G CG P+PC AP+
Sbjct: 65 GGCGGPAPCAAAPI 78
>U41746-5|AAT81186.1| 492|Caenorhabditis elegans Innexin protein
10, isoform b protein.
Length = 492
Score = 25.8 bits (54), Expect = 6.2
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +1
Query: 193 WSLSILVLAFSGFFLWM 243
W L++LV F FF W+
Sbjct: 290 WYLALLVFTFGSFFYWL 306
>U41746-4|AAA83332.1| 559|Caenorhabditis elegans Innexin protein
10, isoform a protein.
Length = 559
Score = 25.8 bits (54), Expect = 6.2
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +1
Query: 193 WSLSILVLAFSGFFLWM 243
W L++LV F FF W+
Sbjct: 290 WYLALLVFTFGSFFYWL 306
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 25.8 bits (54), Expect = 6.2
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -3
Query: 180 PQQGEGSPQAPRGAHRREEGGTIAD 106
PQQ +G P P G H EGG D
Sbjct: 761 PQQQQGGPMGPPGGH--HEGGDGGD 783
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 25.8 bits (54), Expect = 6.2
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -3
Query: 180 PQQGEGSPQAPRGAHRREEGGTIAD 106
PQQ +G P P G H EGG D
Sbjct: 761 PQQQQGGPMGPPGGH--HEGGDGGD 783
>Z81568-1|CAB04594.1| 681|Caenorhabditis elegans Hypothetical
protein K08E3.1 protein.
Length = 681
Score = 25.4 bits (53), Expect = 8.1
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +2
Query: 134 RCAPRGACGLPSPCCGAPLL 193
R APR C P CG+P L
Sbjct: 427 RYAPRATCSHQRPNCGSPYL 446
>U22831-11|AAL65783.1| 627|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 2, isoform a protein.
Length = 627
Score = 25.4 bits (53), Expect = 8.1
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = -1
Query: 305 HSLYMKAKGNVFKNKRVL--MEYIHRKKPEKARTK 207
HS+ K K N KNK VL + + RKK K+R++
Sbjct: 508 HSIRSKRKAN--KNKSVLSALNFFQRKKEYKSRSE 540
>AY053365-1|AAL15153.1| 627|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor GAR-2b protein.
Length = 627
Score = 25.4 bits (53), Expect = 8.1
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = -1
Query: 305 HSLYMKAKGNVFKNKRVL--MEYIHRKKPEKARTK 207
HS+ K K N KNK VL + + RKK K+R++
Sbjct: 508 HSIRSKRKAN--KNKSVLSALNFFQRKKEYKSRSE 540
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,702,044
Number of Sequences: 27780
Number of extensions: 87672
Number of successful extensions: 256
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 333802358
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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