Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_M17
(179 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc... 26 0.57
SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr 2|... 25 1.0
SPBC2A9.06c |||di-trans,poly-cis-decaprenylcistransferase|Schizo... 24 3.1
SPBC651.07 |csa1||sequence orphan|Schizosaccharomyces pombe|chr ... 24 3.1
SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|... 23 4.0
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb... 23 4.0
SPBC30D10.03c |||IMP 5'-nucleotidase |Schizosaccharomyces pombe|... 23 4.0
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 23 4.0
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 23 5.3
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 22 9.3
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch... 22 9.3
>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
Mis17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 441
Score = 26.2 bits (55), Expect = 0.57
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +3
Query: 69 HSKNIPGTTIEMSANSSPSPIVRSPVHQSPLDSLTN 176
H N+ GTT A P + SP+ S +SLTN
Sbjct: 188 HPGNVTGTTFSSQA---PEERIASPISTSSPESLTN 220
>SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 362
Score = 25.4 bits (53), Expect = 1.0
Identities = 9/26 (34%), Positives = 21/26 (80%)
Frame = +1
Query: 16 WKMVMKLKQEAPELTPSAIVKIFLEQ 93
++ V+KLK++AP+++ +A K F+++
Sbjct: 104 YQSVLKLKEKAPQISSAAKRKSFIKE 129
>SPBC2A9.06c |||di-trans,
poly-cis-decaprenylcistransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 258
Score = 23.8 bits (49), Expect = 3.1
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 7/33 (21%)
Frame = -3
Query: 99 LWLFQEYFYYGRWGKLWCF-----LLQF--HHH 22
LW+ Q + W K W F LL F HHH
Sbjct: 11 LWVIQSVYGAWDWAKNWVFWTCSYLLNFLYHHH 43
>SPBC651.07 |csa1||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 268
Score = 23.8 bits (49), Expect = 3.1
Identities = 14/54 (25%), Positives = 23/54 (42%)
Frame = +3
Query: 3 TRVTMEDGDETEAGSTRAYPICHSKNIPGTTIEMSANSSPSPIVRSPVHQSPLD 164
TR T GD + + PI + +IP +T +S I+ + + LD
Sbjct: 17 TRYTANGGDSNDVVALLVGPIVQTLSIPSSTSSAPLVTSVREILELACNDAVLD 70
>SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 491
Score = 23.4 bits (48), Expect = 4.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Frame = -1
Query: 53 SGASCFSFITIFHGDPR 3
+ A+ F+F ++HGDP+
Sbjct: 236 AAANVFAFGEVYHGDPK 252
>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 23.4 bits (48), Expect = 4.0
Identities = 8/22 (36%), Positives = 16/22 (72%)
Frame = +1
Query: 25 VMKLKQEAPELTPSAIVKIFLE 90
+MK ++PEL P+ +V+ F++
Sbjct: 600 IMKSMVDSPELNPNILVEQFID 621
>SPBC30D10.03c |||IMP 5'-nucleotidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 405
Score = 23.4 bits (48), Expect = 4.0
Identities = 6/21 (28%), Positives = 13/21 (61%)
Frame = -2
Query: 130 IGDGDEFADISMVVPGIFLLW 68
+ +G ++ + M+VP I + W
Sbjct: 73 VSEGGSYSQLKMLVPSITIFW 93
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 23.4 bits (48), Expect = 4.0
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +2
Query: 92 NHRNVCKFISVPYSEVSGTSKPFRFINKQ 178
N R K + PY G+S+PF + K+
Sbjct: 7 NTRTSSKTVKKPYDPPQGSSRPFFTVLKR 35
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 23.0 bits (47), Expect = 5.3
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +3
Query: 75 KNIPGTTIEMSANSSPSPIVRSPVHQSPLDSLT 173
KNIP T A S SP+V + LD +T
Sbjct: 554 KNIPSTYRAPQAPSVLSPVVTASEGDFELDGIT 586
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 22.2 bits (45), Expect = 9.3
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = -3
Query: 33 FHHHLPW*PSC 1
FHH PW SC
Sbjct: 103 FHHEYPWILSC 113
>SPBC25B2.07c |mug164||microtubule-associated
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 22.2 bits (45), Expect = 9.3
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +3
Query: 78 NIPGTTIEMSANSSPSPIVRSP 143
N+ + +A S SP+V+SP
Sbjct: 193 NVRSPKVGFNAKSDDSPVVKSP 214
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 798,405
Number of Sequences: 5004
Number of extensions: 13053
Number of successful extensions: 46
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 40
effective length of database: 2,162,318
effective search space used: 41084042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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