Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_M17
(179 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0168 + 26423464-26423790,26423828-26423941,26424366-264244... 28 0.92
09_02_0159 + 5105272-5106360,5107605-5107769 27 2.1
11_01_0616 - 4933787-4934533,4935590-4935680,4935719-4936203 26 3.7
01_06_0396 + 29014101-29014327,29014438-29014594 26 3.7
12_02_1167 + 26647293-26648356,26648493-26648577,26649129-266491... 26 4.9
02_02_0170 + 7395480-7395917 26 4.9
12_02_0035 - 12563503-12564405,12564494-12565611,12565709-125662... 25 6.5
11_04_0094 + 13418604-13418680,13419331-13419400,13420078-134202... 25 6.5
09_04_0725 + 19749227-19749361,19749705-19749772,19749869-197499... 25 6.5
02_01_0348 - 2506007-2506909,2507003-2508120,2508230-2508883,250... 25 6.5
01_06_1575 + 38339970-38340786,38340884-38342001,38342099-38343055 25 6.5
01_06_0680 + 31132683-31133499,31133597-31134717,31134811-31135713 25 6.5
07_03_0636 + 20168180-20168462,20168961-20170303,20170401-201706... 25 8.6
06_01_0514 - 3706178-3706787,3709334-3709441,3710425-3710810 25 8.6
05_06_0260 + 26736631-26736771,26736850-26736981,26737066-267372... 25 8.6
04_04_1109 + 30965143-30965312,30965406-30965586,30965669-309661... 25 8.6
>02_05_0168 +
26423464-26423790,26423828-26423941,26424366-26424448,
26424756-26424804,26425789-26425894,26426460-26426518,
26426604-26426678,26427112-26427160,26427253-26427329,
26427662-26427744,26427852-26427867
Length = 345
Score = 28.3 bits (60), Expect = 0.92
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +3
Query: 21 DGDETEAGSTRAYPICHSKNIPGTTIEMSANSSPSPIVRSP 143
DG+ E ++ PICH + P T ++ +A + I +P
Sbjct: 287 DGELYELDGRKSQPICHGPSSPDTLLQDAAKVIKARIASNP 327
>09_02_0159 + 5105272-5106360,5107605-5107769
Length = 417
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +3
Query: 84 PGTTIEMSANSSPSPIVRSPVHQSPLD 164
P +E A S P P+ SP H S D
Sbjct: 339 PADNMEADAQSGPQPVTSSPPHTSQED 365
>11_01_0616 - 4933787-4934533,4935590-4935680,4935719-4936203
Length = 440
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +3
Query: 42 GSTRAYPICHSKNIPGTTIEMSANS--SPSPIVRSPVHQSPLDSLTN 176
G+T A P C ++ PG ++++ N +P+ + RS + + TN
Sbjct: 147 GTTTATPRCTWRSWPGVCLDLANNDGLTPADLARSTIPAGLYSNRTN 193
>01_06_0396 + 29014101-29014327,29014438-29014594
Length = 127
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = +3
Query: 114 SSPSPIVRSPVHQSPL 161
S PSPI SPVHQ L
Sbjct: 108 SMPSPITNSPVHQKGL 123
>12_02_1167 +
26647293-26648356,26648493-26648577,26649129-26649191,
26649381-26649443,26649987-26650070,26650229-26650783
Length = 637
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/41 (31%), Positives = 17/41 (41%)
Frame = +3
Query: 21 DGDETEAGSTRAYPICHSKNIPGTTIEMSANSSPSPIVRSP 143
DGD G+ R Y + P A SP+P+ SP
Sbjct: 28 DGDFWAGGAPRLYDFSQQEQKPFLPAPAPAPPSPAPVPASP 68
>02_02_0170 + 7395480-7395917
Length = 145
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +3
Query: 18 EDGDETEAGST--RAYPICHSKNIPGTTIEMSANSSPSPI 131
E + T AG+T RA+P+ + + GTT+ S P+ +
Sbjct: 45 EAWEATTAGATAARAWPVASAVTVDGTTMAASTAEWPAAV 84
>12_02_0035 -
12563503-12564405,12564494-12565611,12565709-12566239,
12566337-12567153
Length = 1122
Score = 25.4 bits (53), Expect = 6.5
Identities = 13/22 (59%), Positives = 18/22 (81%), Gaps = 1/22 (4%)
Frame = +1
Query: 25 VMKL-KQEAPELTPSAIVKIFL 87
V+KL K E P+LTP+A+V+I L
Sbjct: 89 VLKLFKLEFPQLTPNALVRIGL 110
>11_04_0094 +
13418604-13418680,13419331-13419400,13420078-13420236,
13420334-13420445,13420530-13420649,13422249-13422406,
13422987-13423217,13424621-13424713,13425088-13425227,
13426331-13426401,13427554-13427637,13427752-13427846
Length = 469
Score = 25.4 bits (53), Expect = 6.5
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -3
Query: 87 QEYFYYGRWGKLWCFLLQFHH 25
++Y RW L C L++FHH
Sbjct: 13 RQYRNNKRWAGLQCVLVKFHH 33
>09_04_0725 +
19749227-19749361,19749705-19749772,19749869-19749938,
19750244-19751482,19755359-19755423,19755502-19755655,
19755725-19755733
Length = 579
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +3
Query: 45 STRAYPICHSKNIPGTTIEMSANSSPSPIVRSPVHQSPLDSLTNN 179
+T + + +PGT++E+S + P+V S S + NN
Sbjct: 295 ATAVNSMSFASTLPGTSLEISGSQEGVPVVSSSCLTSMTANALNN 339
>02_01_0348 -
2506007-2506909,2507003-2508120,2508230-2508883,
2508920-2509046
Length = 933
Score = 25.4 bits (53), Expect = 6.5
Identities = 13/22 (59%), Positives = 18/22 (81%), Gaps = 1/22 (4%)
Frame = +1
Query: 25 VMKL-KQEAPELTPSAIVKIFL 87
V+KL K E P+LTP+A+V+I L
Sbjct: 77 VLKLFKLEFPQLTPNALVRIGL 98
>01_06_1575 + 38339970-38340786,38340884-38342001,38342099-38343055
Length = 963
Score = 25.4 bits (53), Expect = 6.5
Identities = 13/22 (59%), Positives = 18/22 (81%), Gaps = 1/22 (4%)
Frame = +1
Query: 25 VMKL-KQEAPELTPSAIVKIFL 87
V+KL K E P+LTP+A+V+I L
Sbjct: 89 VLKLFKLEFPQLTPNALVRIGL 110
>01_06_0680 + 31132683-31133499,31133597-31134717,31134811-31135713
Length = 946
Score = 25.4 bits (53), Expect = 6.5
Identities = 13/22 (59%), Positives = 18/22 (81%), Gaps = 1/22 (4%)
Frame = +1
Query: 25 VMKL-KQEAPELTPSAIVKIFL 87
V+KL K E P+LTP+A+V+I L
Sbjct: 89 VLKLFKLEFPQLTPNALVRIGL 110
>07_03_0636 +
20168180-20168462,20168961-20170303,20170401-20170678,
20170790-20170821,20170908-20171314,20171401-20171847
Length = 929
Score = 25.0 bits (52), Expect = 8.6
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = +3
Query: 57 YPICHSKNIPGT---TIEMSANSSPSPIVR-SPVHQSPLDSLTNN 179
+P NI GT TI +N S +V +H PLDS TNN
Sbjct: 402 HPAFDILNIGGTGFRTIGYWSNISDLSVVAPEKLHSEPLDSSTNN 446
>06_01_0514 - 3706178-3706787,3709334-3709441,3710425-3710810
Length = 367
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 87 GTTIEMSANSSPSPIVRSPVHQSPLDSLTNN 179
G T+E +A P+P+ +PV + D NN
Sbjct: 75 GETVEQAAPPVPAPVAVAPVVMNRDDDEVNN 105
>05_06_0260 +
26736631-26736771,26736850-26736981,26737066-26737248,
26737344-26737370,26737482-26737689,26737863-26737944,
26738097-26738205,26738324-26738443,26738567-26738884
Length = 439
Score = 25.0 bits (52), Expect = 8.6
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -1
Query: 89 SRNIFTMADGVSSGASCFSFI 27
SRN+ M D +S+G C S +
Sbjct: 218 SRNVHIMDDSISTGHDCVSIV 238
>04_04_1109 +
30965143-30965312,30965406-30965586,30965669-30966100,
30966176-30966277,30966376-30966681,30966755-30966817,
30967758-30967856
Length = 450
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = +3
Query: 75 KNIPGTTIEMSANSSPSPIVRSPVHQSPLD 164
+N PGT + + N P + HQ P D
Sbjct: 78 QNYPGTYVSVGTNGQPCELAVFHWHQCPSD 107
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,270,657
Number of Sequences: 37544
Number of extensions: 86826
Number of successful extensions: 332
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 332
length of database: 14,793,348
effective HSP length: 39
effective length of database: 13,329,132
effective search space used: 266582640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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