Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_M17
         (179 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF285836-1|AAK27328.1|  325|Homo sapiens NPDC1 protein protein.        28   6.2  
BC004217-1|AAH04217.1|  325|Homo sapiens neural proliferation, d...    27   8.2  
AL807752-28|CAI12775.1|  325|Homo sapiens neural proliferation, ...    27   8.2  
AL807752-27|CAI12774.1|  403|Homo sapiens neural proliferation, ...    27   8.2  
AK074793-1|BAC11212.1|  325|Homo sapiens protein ( Homo sapiens ...    27   8.2  
AF327349-1|AAL56010.1|  325|Homo sapiens NPDC-1 protein protein.       27   8.2  
AF283247-1|AAF82603.1|  287|Homo sapiens NPDC-1 protein.               27   8.2  
AF272357-1|AAF76225.1|  325|Homo sapiens NPDC1-like protein prot...    27   8.2  

>AF285836-1|AAK27328.1|  325|Homo sapiens NPDC1 protein protein.
          Length = 325

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 84  PGTTIEMSANSSPSPIVRSPVHQSPLD 164
           PGT       S  SP+   PVH SPL+
Sbjct: 148 PGTPTPTPHTSMGSPVSSDPVHMSPLE 174


>BC004217-1|AAH04217.1|  325|Homo sapiens neural proliferation,
           differentiation and control, 1 protein.
          Length = 325

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 84  PGTTIEMSANSSPSPIVRSPVHQSPLD 164
           PGT       S  SP+   PVH SPL+
Sbjct: 148 PGTPTPTPHTSLGSPVSSDPVHMSPLE 174


>AL807752-28|CAI12775.1|  325|Homo sapiens neural proliferation,
           differentiation and control, 1 protein.
          Length = 325

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 84  PGTTIEMSANSSPSPIVRSPVHQSPLD 164
           PGT       S  SP+   PVH SPL+
Sbjct: 148 PGTPTPTPHTSLGSPVSSDPVHMSPLE 174


>AL807752-27|CAI12774.1|  403|Homo sapiens neural proliferation,
           differentiation and control, 1 protein.
          Length = 403

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 84  PGTTIEMSANSSPSPIVRSPVHQSPLD 164
           PGT       S  SP+   PVH SPL+
Sbjct: 226 PGTPTPTPHTSLGSPVSSDPVHMSPLE 252


>AK074793-1|BAC11212.1|  325|Homo sapiens protein ( Homo sapiens
           cDNA FLJ90312 fis, clone NT2RP2001276, moderately
           similar to NPDC-1 PROTEIN PRECURSOR. ).
          Length = 325

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 84  PGTTIEMSANSSPSPIVRSPVHQSPLD 164
           PGT       S  SP+   PVH SPL+
Sbjct: 148 PGTPTPTPHTSLGSPVSSDPVHMSPLE 174


>AF327349-1|AAL56010.1|  325|Homo sapiens NPDC-1 protein protein.
          Length = 325

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 84  PGTTIEMSANSSPSPIVRSPVHQSPLD 164
           PGT       S  SP+   PVH SPL+
Sbjct: 148 PGTPTPTPHTSLGSPVSSDPVHMSPLE 174


>AF283247-1|AAF82603.1|  287|Homo sapiens NPDC-1 protein.
          Length = 287

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 84  PGTTIEMSANSSPSPIVRSPVHQSPLD 164
           PGT       S  SP+   PVH SPL+
Sbjct: 110 PGTPTPTPHTSLGSPVSSDPVHMSPLE 136


>AF272357-1|AAF76225.1|  325|Homo sapiens NPDC1-like protein
           protein.
          Length = 325

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 84  PGTTIEMSANSSPSPIVRSPVHQSPLD 164
           PGT       S  SP+   PVH SPL+
Sbjct: 148 PGTPTPTPHTSLGSPVSSDPVHMSPLE 174


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,973,116
Number of Sequences: 237096
Number of extensions: 497245
Number of successful extensions: 1537
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1537
length of database: 76,859,062
effective HSP length: 39
effective length of database: 67,612,318
effective search space used: 1352246360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)