Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_M17
         (179 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81064-5|CAB02964.2| 1392|Caenorhabditis elegans Hypothetical pr...    27   1.8  
Z35603-3|CAA84675.1|  433|Caenorhabditis elegans Hypothetical pr...    27   2.3  
U39853-2|AAK39225.1|  771|Caenorhabditis elegans Kinase suppress...    27   2.3  
U38820-1|AAA92436.1|  771|Caenorhabditis elegans KSR-1 protein.        27   2.3  
S80647-1|AAB35769.1|  771|Caenorhabditis elegans KSR-1 protein.        27   2.3  
AF098501-3|AAM69106.1|  275|Caenorhabditis elegans Hypothetical ...    27   2.3  
AF098501-2|AAM69105.1|  298|Caenorhabditis elegans Hypothetical ...    27   2.3  
AF098501-1|AAC67404.2|  548|Caenorhabditis elegans Hypothetical ...    27   2.3  
Z69302-7|CAL36505.1|  115|Caenorhabditis elegans Hypothetical pr...    25   5.4  
U40947-4|AAZ32798.1|  883|Caenorhabditis elegans Anion/bicarbona...    25   7.1  
U40947-3|AAZ32797.1|  956|Caenorhabditis elegans Anion/bicarbona...    25   7.1  
AY954522-1|AAX34430.1|  936|Caenorhabditis elegans anion transpo...    25   7.1  
AY887906-1|AAX34418.1|  956|Caenorhabditis elegans anion transpo...    25   7.1  
Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical p...    25   9.4  
Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical pr...    25   9.4  
Z11505-2|CAA77585.1|  418|Caenorhabditis elegans Hypothetical pr...    25   9.4  
U41007-17|AAA82261.1|  507|Caenorhabditis elegans Hypothetical p...    25   9.4  
AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein.      25   9.4  
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ...    25   9.4  

>Z81064-5|CAB02964.2| 1392|Caenorhabditis elegans Hypothetical
           protein F16B12.6 protein.
          Length = 1392

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +3

Query: 3   TRVTMEDGDETEAGSTRAYPICHSKNIPGTTIEMS 107
           T+   +  +ET AG  +  P+C  ++   TT++ S
Sbjct: 7   TKSAAQPSEETPAGEEKPLPMCPEESAKDTTVQSS 41


>Z35603-3|CAA84675.1|  433|Caenorhabditis elegans Hypothetical
           protein T02C12.3 protein.
          Length = 433

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 111 LQTFLWLFQEYFYYGRWGKLWC 46
           L++ L  +  Y   G WG+LWC
Sbjct: 269 LRSILQKYAFYILSGPWGRLWC 290


>U39853-2|AAK39225.1|  771|Caenorhabditis elegans Kinase suppressor
           of activatedras protein 1 protein.
          Length = 771

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 69  HSKNIPGTTIEMSANSSPSPIVRSPVHQSPLDSLTN 176
           HS+   G+T E S  S+P+ +  SP    P  S+T+
Sbjct: 151 HSRTSSGSTDEPSGQSTPAIVTPSPKFNVPSLSVTS 186


>U38820-1|AAA92436.1|  771|Caenorhabditis elegans KSR-1 protein.
          Length = 771

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 69  HSKNIPGTTIEMSANSSPSPIVRSPVHQSPLDSLTN 176
           HS+   G+T E S  S+P+ +  SP    P  S+T+
Sbjct: 151 HSRTSSGSTDEPSGQSTPAIVTPSPKFNVPSLSVTS 186


>S80647-1|AAB35769.1|  771|Caenorhabditis elegans KSR-1 protein.
          Length = 771

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 69  HSKNIPGTTIEMSANSSPSPIVRSPVHQSPLDSLTN 176
           HS+   G+T E S  S+P+ +  SP    P  S+T+
Sbjct: 151 HSRTSSGSTDEPSGQSTPAIVTPSPKFNVPSLSVTS 186


>AF098501-3|AAM69106.1|  275|Caenorhabditis elegans Hypothetical
           protein H28G03.2c protein.
          Length = 275

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 60  PICHSKNIPGTTIEMSANSSPSPIVRSPVHQSP-LDSLTNN 179
           PI  S   PG  + M+  + P P  +    Q+P ++ +TNN
Sbjct: 180 PIAFSNAPPGLKLGMNDYNQPPPAKKPAAQQNPQMNRITNN 220


>AF098501-2|AAM69105.1|  298|Caenorhabditis elegans Hypothetical
           protein H28G03.2b protein.
          Length = 298

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 60  PICHSKNIPGTTIEMSANSSPSPIVRSPVHQSP-LDSLTNN 179
           PI  S   PG  + M+  + P P  +    Q+P ++ +TNN
Sbjct: 203 PIAFSNAPPGLKLGMNDYNQPPPAKKPAAQQNPQMNRITNN 243


>AF098501-1|AAC67404.2|  548|Caenorhabditis elegans Hypothetical
           protein H28G03.2a protein.
          Length = 548

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 60  PICHSKNIPGTTIEMSANSSPSPIVRSPVHQSP-LDSLTNN 179
           PI  S   PG  + M+  + P P  +    Q+P ++ +TNN
Sbjct: 453 PIAFSNAPPGLKLGMNDYNQPPPAKKPAAQQNPQMNRITNN 493


>Z69302-7|CAL36505.1|  115|Caenorhabditis elegans Hypothetical
           protein F40F8.12 protein.
          Length = 115

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 5/30 (16%)
 Frame = +3

Query: 54  AYPIC-----HSKNIPGTTIEMSANSSPSP 128
           AY +C     H+ + P  T    ANSSP+P
Sbjct: 13  AYSVCQSSFSHASSTPSVTTSKYANSSPTP 42


>U40947-4|AAZ32798.1|  883|Caenorhabditis elegans Anion/bicarbonate
           transporter familyprotein 4, isoform b protein.
          Length = 883

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 95  HRNVCKFISVPYSEVSGTSKPF 160
           H NVC+FI++ + E +   K F
Sbjct: 273 HVNVCRFIAIRFVETTAMEKIF 294


>U40947-3|AAZ32797.1|  956|Caenorhabditis elegans Anion/bicarbonate
           transporter familyprotein 4, isoform a protein.
          Length = 956

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 95  HRNVCKFISVPYSEVSGTSKPF 160
           H NVC+FI++ + E +   K F
Sbjct: 273 HVNVCRFIAIRFVETTAMEKIF 294


>AY954522-1|AAX34430.1|  936|Caenorhabditis elegans anion
           transporter ABTS-4b protein.
          Length = 936

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 95  HRNVCKFISVPYSEVSGTSKPF 160
           H NVC+FI++ + E +   K F
Sbjct: 273 HVNVCRFIAIRFVETTAMEKIF 294


>AY887906-1|AAX34418.1|  956|Caenorhabditis elegans anion
           transporter ABTS-4a protein.
          Length = 956

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 95  HRNVCKFISVPYSEVSGTSKPF 160
           H NVC+FI++ + E +   K F
Sbjct: 273 HVNVCRFIAIRFVETTAMEKIF 294


>Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical
            protein C02F4.1 protein.
          Length = 1781

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +3

Query: 9    VTMEDGDETEAGSTRAYPICHSKNI--PGTTIEMSANSSPS 125
            +TM+ G     G+  A  I  +K    PGT + +S+ S+PS
Sbjct: 1658 MTMKSGKAAVLGNAVANLIYSNKRSSGPGTPVNLSSRSAPS 1698


>Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical protein
            C02F4.1 protein.
          Length = 1781

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +3

Query: 9    VTMEDGDETEAGSTRAYPICHSKNI--PGTTIEMSANSSPS 125
            +TM+ G     G+  A  I  +K    PGT + +S+ S+PS
Sbjct: 1658 MTMKSGKAAVLGNAVANLIYSNKRSSGPGTPVNLSSRSAPS 1698


>Z11505-2|CAA77585.1|  418|Caenorhabditis elegans Hypothetical
           protein F59B2.3 protein.
          Length = 418

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
 Frame = +3

Query: 21  DGDETEAGSTRAYPIC--HSKNIPGTTIEMSANSS 119
           DG  T AGS  + P C  H     G  IE +  S+
Sbjct: 335 DGTNTTAGSVASMPYCIRHLMKATGCPIEFALQSA 369


>U41007-17|AAA82261.1|  507|Caenorhabditis elegans Hypothetical
           protein C33H5.2 protein.
          Length = 507

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -3

Query: 123 TEMNLQTFLWLFQEYFYYGRWGKLWC 46
           +++ L+ +   F +YFY GR+ K+ C
Sbjct: 431 SDLVLKCYNEKFYDYFYSGRYEKITC 456


>AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein.
          Length = 1781

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +3

Query: 9    VTMEDGDETEAGSTRAYPICHSKNI--PGTTIEMSANSSPS 125
            +TM+ G     G+  A  I  +K    PGT + +S+ S+PS
Sbjct: 1658 MTMKSGKAAVLGNAVANLIYSNKRSSGPGTPVNLSSRSAPS 1698


>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
           protein Y40C5A.3 protein.
          Length = 2344

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +3

Query: 30  ETEAGSTRAYPICHSKNIPGTTIEMSANSSPSPIVRSPVH 149
           E   G+    P      +P T+ EM+   +P P   SPV+
Sbjct: 519 EVAPGNVEKTPDQTDNQVPETSHEMAPAPAPQPSPSSPVY 558


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,420,246
Number of Sequences: 27780
Number of extensions: 75921
Number of successful extensions: 293
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 293
length of database: 12,740,198
effective HSP length: 40
effective length of database: 11,628,998
effective search space used: 220950962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)