Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_M12
         (193 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa...    23   4.2  
SPAC4F10.03c |||2'-O-ribose methyltransferase|Schizosaccharomyce...    22   9.8  
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar...    22   9.8  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    22   9.8  

>SPAC19E9.02 |fin1||serine/threonine protein kinase
           Fin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 130 TLVPNSGTRRLHTVSTLMEY 189
           TL     +R LHT +TLM+Y
Sbjct: 438 TLRKELSSRALHTTATLMKY 457


>SPAC4F10.03c |||2'-O-ribose methyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 285

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 136 RGFDIS*FYNQLEVLFNR 83
           RG D+S  Y+QL ++F +
Sbjct: 167 RGRDVSLLYSQLRLMFRK 184


>SPAC13F5.06c |sec10||exocyst complex subunit
           Sec10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = -2

Query: 186 FHQRTNRMKAPRARIRHEGSTLVNFTTNLRYYLIDASTML 67
           +HQ++N ++   A++      L +   ++R  L+DA   L
Sbjct: 90  YHQKSNHLREKFAQVLELSRHLEDNVNDMRSGLVDAGQEL 129


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -1

Query: 142 SARGFDIS*FYNQLEVLFNRCVYNVSY*VC 53
           S   F+ S  Y+   VLF+ C    +Y VC
Sbjct: 553 SRSAFEFSFVYDNEIVLFDTCYMVCTYIVC 582


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 646,128
Number of Sequences: 5004
Number of extensions: 9022
Number of successful extensions: 20
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 2,362,478
effective HSP length: 43
effective length of database: 2,147,306
effective search space used: 42946120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)