Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_M12
         (193 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0290 - 22791338-22791925,22792012-22793196,22793835-227939...    25   6.4  
03_06_0342 + 33268971-33270533                                         25   8.5  

>03_05_0290 -
           22791338-22791925,22792012-22793196,22793835-22793904,
           22795918-22795979
          Length = 634

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -2

Query: 105 NLRYYLIDASTMLVIEYVDIYFQVNKVQKKKKTSC 1
           N+R+   + +T +VI   D+ F ++K     K+SC
Sbjct: 19  NIRFVATELATDIVISIGDVKFCLHKFPLLSKSSC 53


>03_06_0342 + 33268971-33270533
          Length = 520

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = -2

Query: 126 TLVNFTTNLRYYLIDAST--MLVIEYVDIYFQVNKVQKKKK 10
           T V+  T+LR   I+ ++  ++VIE +D    +   +KKKK
Sbjct: 302 TSVHSNTDLRKLFIETTSKSIIVIEDIDCSLDLTGARKKKK 342


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,789,897
Number of Sequences: 37544
Number of extensions: 48351
Number of successful extensions: 93
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 14,793,348
effective HSP length: 43
effective length of database: 13,178,956
effective search space used: 263579120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)