Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_M12
         (193 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC068989-1|AAH68989.1|  422|Homo sapiens chromosome 14 open read...    28   4.6  
AK128084-1|BAC87265.1| 1177|Homo sapiens protein ( Homo sapiens ...    28   4.6  
AK058044-1|BAB71637.1|  422|Homo sapiens protein ( Homo sapiens ...    28   4.6  

>BC068989-1|AAH68989.1|  422|Homo sapiens chromosome 14 open reading
           frame 50 protein.
          Length = 422

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -2

Query: 135 EGSTLVNFTTNLRYYLIDASTMLVIEYVDIYFQVNKVQKKKKT 7
           E   + +FTT +R   +D   M ++ Y+  Y + N ++KK K+
Sbjct: 133 EMQRICSFTTFMRNKNLDNFLMALLYYLSHYLEKNSLEKKPKS 175


>AK128084-1|BAC87265.1| 1177|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46205 fis, clone TESTI4010544. ).
          Length = 1177

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -2

Query: 90  LIDASTMLVIEYVDIYFQVN 31
           LI A T L IE+VDIY+ +N
Sbjct: 313 LIPAHTYLYIEFVDIYYSLN 332


>AK058044-1|BAB71637.1|  422|Homo sapiens protein ( Homo sapiens
           cDNA FLJ25315 fis, clone TST00114. ).
          Length = 422

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -2

Query: 135 EGSTLVNFTTNLRYYLIDASTMLVIEYVDIYFQVNKVQKKKKT 7
           E   + +FTT +R   +D   M ++ Y+  Y + N ++KK K+
Sbjct: 133 EMQRICSFTTFMRNKNLDNFLMALLYYLSHYLEKNSLEKKPKS 175


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,741,508
Number of Sequences: 237096
Number of extensions: 283661
Number of successful extensions: 415
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 76,859,062
effective HSP length: 43
effective length of database: 66,663,934
effective search space used: 1333278680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)