Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_M12
         (193 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF024492-3|AAF98619.1|  918|Caenorhabditis elegans Hypothetical ...    27   1.8  
Z71177-5|CAA94871.2|  531|Caenorhabditis elegans Hypothetical pr...    26   3.2  
Z72508-5|CAA96638.1|  525|Caenorhabditis elegans Hypothetical pr...    26   4.3  
Z74476-6|CAA98967.1| 1139|Caenorhabditis elegans Hypothetical pr...    25   5.6  
Z74473-6|CAA98951.1| 1139|Caenorhabditis elegans Hypothetical pr...    25   5.6  
U20168-1|AAA66364.1| 1139|Caenorhabditis elegans Lin-25 protein ...    25   5.6  
U21310-5|AAY86191.1|  148|Caenorhabditis elegans Hypothetical pr...    25   9.8  

>AF024492-3|AAF98619.1|  918|Caenorhabditis elegans Hypothetical
           protein F14F9.4 protein.
          Length = 918

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -2

Query: 186 FHQRTNRMKAPRARIRHEGSTLVNFTTNLRYYLIDAS 76
           FH +   M+    ++R E + LV  T     YLIDAS
Sbjct: 354 FHNQKQNMEHQMEQLREEDNNLVIKTIQPGQYLIDAS 390


>Z71177-5|CAA94871.2|  531|Caenorhabditis elegans Hypothetical
           protein AC3.8 protein.
          Length = 531

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 8/28 (28%), Positives = 20/28 (71%)
 Frame = -2

Query: 102 LRYYLIDASTMLVIEYVDIYFQVNKVQK 19
           ++YY++DA  +++I ++ I + +N + K
Sbjct: 490 IKYYMLDAYAIIIIFFLSILYVLNLIIK 517


>Z72508-5|CAA96638.1|  525|Caenorhabditis elegans Hypothetical
           protein F28H7.6 protein.
          Length = 525

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = -2

Query: 183 HQRTNRMKAPRARIRHEGSTLVNFTTNLRYYLIDASTMLVIEYVDIYF 40
           HQ   +++  +A +RH  S    ++    YYLI    ++ I    I+F
Sbjct: 444 HQMLRQLRKVKAVLRHFDSKSDTYSEKTTYYLIGGCFVIAIFMEFIWF 491


>Z74476-6|CAA98967.1| 1139|Caenorhabditis elegans Hypothetical
          protein F56H9.5 protein.
          Length = 1139

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -2

Query: 87 IDASTMLVIEYVDIYFQVNKVQKKKKTS 4
          ID+ST +VIEY+D     +  +++K +S
Sbjct: 6  IDSSTKIVIEYIDKLRNCSNEKRQKVSS 33


>Z74473-6|CAA98951.1| 1139|Caenorhabditis elegans Hypothetical
          protein F56H9.5 protein.
          Length = 1139

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -2

Query: 87 IDASTMLVIEYVDIYFQVNKVQKKKKTS 4
          ID+ST +VIEY+D     +  +++K +S
Sbjct: 6  IDSSTKIVIEYIDKLRNCSNEKRQKVSS 33


>U20168-1|AAA66364.1| 1139|Caenorhabditis elegans Lin-25 protein
          protein.
          Length = 1139

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -2

Query: 87 IDASTMLVIEYVDIYFQVNKVQKKKKTS 4
          ID+ST +VIEY+D     +  +++K +S
Sbjct: 6  IDSSTKIVIEYIDKLRNCSNEKRQKVSS 33


>U21310-5|AAY86191.1|  148|Caenorhabditis elegans Hypothetical
           protein F40H6.6 protein.
          Length = 148

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1

Query: 10  FFFFLYFIHLKINIYI 57
           FFF  YFI  KI IY+
Sbjct: 117 FFFKFYFIFYKIKIYM 132


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,513,720
Number of Sequences: 27780
Number of extensions: 48166
Number of successful extensions: 103
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 12,740,198
effective HSP length: 43
effective length of database: 11,545,658
effective search space used: 230913160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)