Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_M11
(325 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces... 28 0.40
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c... 26 1.2
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 26 1.6
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 26 1.6
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 2.1
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 25 2.1
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 25 2.8
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa... 25 2.8
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces... 25 2.8
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom... 25 3.7
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p... 25 3.7
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 24 4.9
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 24 4.9
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro... 24 4.9
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 24 4.9
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 24 4.9
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces... 24 6.5
SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces po... 24 6.5
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit... 24 6.5
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 24 6.5
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz... 24 6.5
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 24 6.5
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 24 6.5
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc... 24 6.5
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 23 8.6
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 23 8.6
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su... 23 8.6
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 23 8.6
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po... 23 8.6
>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 578
Score = 27.9 bits (59), Expect = 0.40
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 189 LKDQDEMEFHAANIKQQ*FLRVYR 260
L+D DE+E N+K + F R+YR
Sbjct: 474 LRDTDEIEIDVGNMKPEVFHRIYR 497
>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 355
Score = 26.2 bits (55), Expect = 1.2
Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Frame = +3
Query: 57 QTEASSSQ---APVGSSTNEPSDAASASTNEDNQEAKSFKCDDCGKLLK--DQDEMEFHA 221
+ ++SSS+ AP+ +S + AAS ++ +DN +A + D+ +K ++++ME
Sbjct: 29 EDDSSSSEQEHAPIPNSFSSQITAASDASKDDNYDASIYGFDEFYDSMKSAEREQMELKR 88
Query: 222 ANIKQQ 239
K +
Sbjct: 89 LESKDR 94
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 25.8 bits (54), Expect = 1.6
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Frame = +3
Query: 69 SSSQAPVGSSTNEPSDAASA---STNEDNQEAKSFKCDDCGKLLKDQD 203
SSS+A S+++ SD++S+ S++EDN + S + +D D
Sbjct: 98 SSSEASGSGSSSDESDSSSSESESSSEDNDSSSSSSDSESESSSEDSD 145
Score = 25.8 bits (54), Expect = 1.6
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = +3
Query: 21 EGLLAHADDPGMQTEASSSQAPVGSSTNEPSDAASASTNEDNQEAKSFKCDDCGKLLKDQ 200
EG + + ++E+SS S++ SD+ S S++ED+ + S + KD
Sbjct: 214 EGSDSSSSSSSSESESSSED---NDSSSSSSDSESESSSEDSDSSSSSSDSESESSSKDS 270
Query: 201 D 203
D
Sbjct: 271 D 271
Score = 25.4 bits (53), Expect = 2.1
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +3
Query: 39 ADDPGMQTEASSSQAPVGS-STNEPSDAASASTNEDNQEAKSFKCDDCGKLLKDQD 203
+D +++ S + GS S++ S + S S++EDN + S + +D D
Sbjct: 144 SDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSD 199
Score = 25.4 bits (53), Expect = 2.1
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +3
Query: 39 ADDPGMQTEASSSQAPVGS-STNEPSDAASASTNEDNQEAKSFKCDDCGKLLKDQD 203
+D +++ S + GS S++ S + S S++EDN + S + +D D
Sbjct: 198 SDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSD 253
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1385
Score = 25.8 bits (54), Expect = 1.6
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = +3
Query: 96 STNEPSDAASASTNEDNQE-AKSFKCDDC--GKLLKDQDEMEFHAANIKQ 236
STN +D+A+ ++ED+ + A +F D K + M+ A++KQ
Sbjct: 923 STNHTNDSAALKSSEDHSKLANNFSVPDSIDHKFYQQVKNMQLELASLKQ 972
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.4 bits (53), Expect = 2.1
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 60 TEASSSQAPVGSSTNEPSDAASASTNEDNQEAKS 161
T +SSS +P SST + +S+S++ + + S
Sbjct: 136 TSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSS 169
Score = 24.6 bits (51), Expect = 3.7
Identities = 9/33 (27%), Positives = 21/33 (63%)
Frame = +3
Query: 60 TEASSSQAPVGSSTNEPSDAASASTNEDNQEAK 158
+ +SSS P+ SST+ ++S+S++ + ++
Sbjct: 201 SSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSR 233
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 25.4 bits (53), Expect = 2.1
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +3
Query: 30 LAHADDPGMQTEASSSQAPVGSSTNEPSDAASASTNEDNQEAK 158
L + DP QT+ SS ++ E SD + + N D E K
Sbjct: 287 LKASHDPSNQTQLSSPNKSSSPTSIEISDFSKNNENHDQSENK 329
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 25.0 bits (52), Expect = 2.8
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 60 TEASSSQAPVGSSTNEPSDAASASTNEDNQEAKSF 164
TE SSS P+G + P S+++ + + ++SF
Sbjct: 787 TELSSSNIPLGHALGNPESNNSSNSFKPSHPSQSF 821
>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 25.0 bits (52), Expect = 2.8
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +1
Query: 58 KQKLLVLRPRWAVVQMSLQTRPVLPRTKIIR 150
K KL +L R Q ++ RPVLPRT IR
Sbjct: 493 KNKLTMLAAR----QKKIKNRPVLPRTAGIR 519
>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 745
Score = 25.0 bits (52), Expect = 2.8
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 93 SSTNEPSDAASASTNEDNQEAKS 161
SS+N PSD S + +DN+ +KS
Sbjct: 595 SSSNSPSDIESNYSADDNEISKS 617
>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1325
Score = 24.6 bits (51), Expect = 3.7
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +3
Query: 93 SSTNEPSDAASASTNEDNQEAKSFKCDDCGKLLKDQDE 206
S T EP++ A ++ +E+++ K + + ++DQDE
Sbjct: 897 SPTPEPTEMAESNISEESEGWKLIEQPNVESEIEDQDE 934
>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 595
Score = 24.6 bits (51), Expect = 3.7
Identities = 11/35 (31%), Positives = 13/35 (37%)
Frame = -2
Query: 177 NHHI*KTSLPDYLRSWKHWPRLKAHLYYCPPGPEN 73
N K S+P W W + Y PP P N
Sbjct: 112 NQQCEKESIPVSNIDWLQWASVPLFAYDLPPDPSN 146
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 24.2 bits (50), Expect = 4.9
Identities = 9/23 (39%), Positives = 11/23 (47%)
Frame = -2
Query: 141 LRSWKHWPRLKAHLYYCPPGPEN 73
+ W H A + CPP PEN
Sbjct: 1146 MNEWIHSLNFNAAMITCPPLPEN 1168
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 24.2 bits (50), Expect = 4.9
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 63 EASSSQAPVGSSTNEPSDAAS 125
E+S +AP SST P+ AAS
Sbjct: 196 ESSQQKAPSSSSTATPASAAS 216
>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 240
Score = 24.2 bits (50), Expect = 4.9
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +3
Query: 165 KCDDCGKLLKDQDEMEFHAANIKQQ*F 245
KC +C KLL + EFH+ F
Sbjct: 4 KCLECDKLLSSIEMAEFHSTKTSHDQF 30
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 24.2 bits (50), Expect = 4.9
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +3
Query: 69 SSSQAPVGSSTNEPSDAASASTNEDNQEAKS 161
+SS + + SST S++ SAST+ ++ + S
Sbjct: 994 TSSSSTIPSSTRSESNSESASTSSASKRSSS 1024
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 24.2 bits (50), Expect = 4.9
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +3
Query: 60 TEASSSQAPVGSSTNEPSDAASASTNEDNQEAKSFKCDDCGKLLK 194
+ ASS+ + V S + S A SAS + + S D LK
Sbjct: 254 SSASSATSSVSSVVSSASSALSASASSASASVSSSASSDASPALK 298
>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 735
Score = 23.8 bits (49), Expect = 6.5
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = +1
Query: 79 RPRWAVVQMSLQTRPVLPRTKIIRKRSLLN 168
RPR M P +P K +R+R L+
Sbjct: 44 RPRTLSTSMEASAAPTIPELKNLRRRGSLD 73
>SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 351
Score = 23.8 bits (49), Expect = 6.5
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 114 LKAHLYYCPPGPEN*KLLFAYQDRQHALTTPRA 16
L A ++ P P + L + +Q R+HA +TP A
Sbjct: 119 LGAEVHPVPVAPFSNPLNYNHQARRHAESTPNA 151
>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ysh1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 23.8 bits (49), Expect = 6.5
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -1
Query: 319 FPQVAPTEPSVPLQSTVF 266
F + AP +PSV L+ T+F
Sbjct: 7 FDEDAPVDPSVSLEFTIF 24
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 23.8 bits (49), Expect = 6.5
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +3
Query: 138 EDNQEAKSFKCDDCG 182
+D+ S+ CDDCG
Sbjct: 216 DDDPNKSSYHCDDCG 230
>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1473
Score = 23.8 bits (49), Expect = 6.5
Identities = 7/19 (36%), Positives = 13/19 (68%)
Frame = -2
Query: 132 WKHWPRLKAHLYYCPPGPE 76
+++WPR + +YY PG +
Sbjct: 819 YEYWPRKEDKIYYNRPGKQ 837
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1811
Score = 23.8 bits (49), Expect = 6.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 57 QTEASSSQAPVGSSTNEPSDAASASTNEDNQEA 155
+TE++S S +EP A ST+ DN E+
Sbjct: 648 ETESTSKGEEPQKSKSEPPSAGINSTSMDNLES 680
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 23.8 bits (49), Expect = 6.5
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +3
Query: 60 TEASSSQAPVGSSTNEPSDAASASTNEDNQEAKSFKCDDCGK 185
+ +SSS + + SST S +A+ ST + + S K
Sbjct: 119 SSSSSSSSSLVSSTTSSSSSATPSTTSSSSSSSSSSSSSSSK 160
>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 852
Score = 23.8 bits (49), Expect = 6.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 58 KQKLLVLRPRWAVVQMSLQTRPVL 129
KQ+L++ +WA V TRPVL
Sbjct: 362 KQELIMALQQWASVHGRQVTRPVL 385
>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
Sap155|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1188
Score = 23.4 bits (48), Expect = 8.6
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 180 GKLLKDQDEMEFHAANIKQQ*FLRV 254
GKLLK +DE + A ++++ LR+
Sbjct: 360 GKLLKVEDEAKLTIAELRERKILRL 384
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 23.4 bits (48), Expect = 8.6
Identities = 8/25 (32%), Positives = 13/25 (52%)
Frame = +3
Query: 156 KSFKCDDCGKLLKDQDEMEFHAANI 230
KSF C +C K K + + H ++
Sbjct: 421 KSFVCPECSKKFKRSEHLRRHIRSL 445
>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 23.4 bits (48), Expect = 8.6
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +3
Query: 114 DAASASTNEDNQEAKSFKCDDCGKLLKDQDE 206
D S TNE +F C+ CG LKD +E
Sbjct: 149 DVLSLVTNEG-----TFACNVCGTELKDDEE 174
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 23.4 bits (48), Expect = 8.6
Identities = 7/23 (30%), Positives = 15/23 (65%)
Frame = +3
Query: 150 EAKSFKCDDCGKLLKDQDEMEFH 218
E K ++C+ C K K+ + +++H
Sbjct: 395 ENKPYRCEVCSKRYKNLNGLKYH 417
>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 639
Score = 23.4 bits (48), Expect = 8.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 39 ADDPGMQTEASSSQAPVGSSTNEPSD 116
A+DPG ++ S+S+ SST E S+
Sbjct: 289 AEDPGTESIISTSRKSSYSSTTESSN 314
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,166,434
Number of Sequences: 5004
Number of extensions: 20785
Number of successful extensions: 103
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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