Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_M10
         (166 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        24   3.1  
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa...    23   7.1  
SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         22   9.4  
SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein 3...    22   9.4  

>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 109  TEQNMKLLLTLFYNLRKPYFEFDNV 35
            T   ++L+ TLF N+ KP   F N+
Sbjct: 3444 TPTTLRLMWTLFANVEKPGSTFTNM 3468


>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 97  MKLLLTLFYNLRKPYFEF 44
           M +L + F NL +PYF F
Sbjct: 317 MNILKSDFANLYRPYFNF 334


>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = +3

Query: 90  NFIFCSVIHIYVMMHAVRSLSCCD 161
           +F+F   +H+    H  + LS C+
Sbjct: 34  SFMFVKSLHLMTSQHIFKCLSSCN 57


>SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 46  IQSKAFSNYKRELKVTSYSVL 108
           I  K  +NY  EL+ TSY ++
Sbjct: 77  IPEKIRANYHEELQTTSYDLV 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 592,036
Number of Sequences: 5004
Number of extensions: 7304
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 2,362,478
effective HSP length: 35
effective length of database: 2,187,338
effective search space used: 41559422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)