Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_M10
         (166 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical pr...    26   3.1  
Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical pr...    26   3.1  
AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis p...    26   3.1  
Z70207-4|CAA94133.1|  337|Caenorhabditis elegans Hypothetical pr...    25   9.5  
Z37983-3|CAA86056.1|  621|Caenorhabditis elegans Hypothetical pr...    25   9.5  
AC024801-4|AAF59648.4|  485|Caenorhabditis elegans Hypothetical ...    25   9.5  

>Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical protein
            F18C12.2b protein.
          Length = 2271

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 106  EQNMKLLLTLFYNLRKPYFEFDNVTRFE 23
            E N  +L TL  N+  PY  +DN TR E
Sbjct: 1642 ETNDMVLKTLNSNMENPYMIWDNGTRAE 1669


>Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical protein
            F18C12.2a protein.
          Length = 2279

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 106  EQNMKLLLTLFYNLRKPYFEFDNVTRFE 23
            E N  +L TL  N+  PY  +DN TR E
Sbjct: 1642 ETNDMVLKTLNSNMENPYMIWDNGTRAE 1669


>AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis
            protein RME-8 protein.
          Length = 2279

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 106  EQNMKLLLTLFYNLRKPYFEFDNVTRFE 23
            E N  +L TL  N+  PY  +DN TR E
Sbjct: 1642 ETNDMVLKTLNSNMENPYMIWDNGTRAE 1669


>Z70207-4|CAA94133.1|  337|Caenorhabditis elegans Hypothetical
           protein F15A2.4 protein.
          Length = 337

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 118 MCITEQNMKLLLTLFYN 68
           M   E NM L+LT+FYN
Sbjct: 2   MSAMETNMVLILTIFYN 18


>Z37983-3|CAA86056.1|  621|Caenorhabditis elegans Hypothetical
           protein B0393.3 protein.
          Length = 621

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 56  RLSQIIKES*K*LHILFCNTHLCDDARRSFTIVL 157
           RLS  +K S K +  L      CDDA+ SF + +
Sbjct: 65  RLSDSVKRSVKSVEFLRDELDYCDDAKISFFLAV 98


>AC024801-4|AAF59648.4|  485|Caenorhabditis elegans Hypothetical
           protein Y50D7A.3a protein.
          Length = 485

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +1

Query: 34  LRCQIQSKAFSNYKRELKVTSYSVL*YTSM**CTPFVH 147
           +RCQ    A   Y  E+   +  V+ YT +  C PF H
Sbjct: 206 IRCQWYDNA-EGYSLEVDEWALGVIMYTLLAGCAPFYH 242


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,276,720
Number of Sequences: 27780
Number of extensions: 40706
Number of successful extensions: 108
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 12,740,198
effective HSP length: 35
effective length of database: 11,767,898
effective search space used: 223590062
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)