Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_M10
         (166 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    19   5.6  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    19   5.6  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    19   5.6  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    19   5.6  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    19   5.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              19   5.6  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    19   5.6  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    19   5.6  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    19   7.4  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    18   9.7  

>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = +1

Query: 19  IIQSVLRCQIQSKAFSNYKRELK 87
           I+ + ++C +     +N  RELK
Sbjct: 39  ILTNYIKCMLDEGPCTNEGRELK 61


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 122 IDVYYRTEYEVTFNSLL 72
           IDVY  T + + F SLL
Sbjct: 283 IDVYLGTCFVMVFASLL 299


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 122 IDVYYRTEYEVTFNSLL 72
           IDVY  T + + F SLL
Sbjct: 283 IDVYLGTCFVMVFASLL 299


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +3

Query: 9   NRNNYSKRVTLSN 47
           N NNY+K++   N
Sbjct: 107 NNNNYNKKLYYKN 119


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +1

Query: 31  VLRCQIQSKAFSNYKRELKVTS 96
           +L C I   ++S+   E+K+ S
Sbjct: 170 ILNCTIHIASWSHGSNEIKLNS 191


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 87   SNFIFCSVIHIYVMMHAVRSLSCCDP 164
            SN+  C  I    ++ ++RS S  DP
Sbjct: 1659 SNYNTCDRIKRGTVIRSIRSHSTWDP 1684


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = +1

Query: 19  IIQSVLRCQIQSKAFSNYKRELK 87
           I+ + ++C +     +N  RELK
Sbjct: 39  ILTNYIKCMLDEGPCTNEGRELK 61


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 122 IDVYYRTEYEVTFNSLL 72
           IDVY  T + + F SLL
Sbjct: 222 IDVYLGTCFVMVFASLL 238


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
          acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +2

Query: 38 VVKFKVRLSQII 73
          VVK  +RLSQ+I
Sbjct: 47 VVKLGLRLSQLI 58


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -2

Query: 150 IVNERRASSH 121
           ++ ERRA SH
Sbjct: 233 VLEERRAQSH 242


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,171
Number of Sequences: 438
Number of extensions: 591
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 34
effective length of database: 131,451
effective search space used:  2629020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)