Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_M09
         (186 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    24   3.0  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    23   5.3  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    22   9.3  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    22   9.3  

>SPBC30D10.10c |tor1||phosphatidylinositol kinase
           Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 6   RTICAFRGYVQTPYWIHPP 62
           R +C   GYV  PY  +PP
Sbjct: 714 RKLCGRSGYVIQPYLDYPP 732


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 102 TSVTLYSHLVYYKMAGESNMASVHN 28
           T   LYSH V  KM  E ++ S  N
Sbjct: 736 TQTELYSHFVGRKMDREQDLPSATN 760


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 34   YRRHIGFTRHFVVHEMRVQRHRRILFLV 117
            Y R +    HF++ E R +   +ILFL+
Sbjct: 969  YLRTVFLRIHFLISEWRWEDVAQILFLI 996


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 119 KDRFLITLISNKKMCV 166
           + RFLI + SNKKM V
Sbjct: 518 RKRFLIKMGSNKKMLV 533


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 806,783
Number of Sequences: 5004
Number of extensions: 12385
Number of successful extensions: 19
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 2,362,478
effective HSP length: 42
effective length of database: 2,152,310
effective search space used: 40893890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)