Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_M09
         (186 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   1.8  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    20   2.4  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    19   4.1  
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    19   7.2  
AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    19   7.2  
AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.           19   7.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    19   7.2  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    18   9.5  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +3

Query: 48  WIHPPFCSTRDASTTSQTYFIFS 116
           W+ P +   R   T SQT  I+S
Sbjct: 344 WLDPEYPMIRVHKTQSQTIDIYS 366


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
 Frame = +2

Query: 44  ILDSPA--IL*YTRCEYNVTDVF 106
           IL++P   ++ YTRCE   T+ F
Sbjct: 397 ILNAPVNQLIRYTRCENPKTNFF 419


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 85  VQRHRRILFLVQRPLFNHSY 144
           + ++ RI+F V   LFN  Y
Sbjct: 464 IDKYSRIIFPVSFMLFNAIY 483


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 61  HFVVHEMRVQRHRRI 105
           HF  +E R  RHRR+
Sbjct: 31  HFE-NEERADRHRRV 44


>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
           precursor protein.
          Length = 95

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 61  HFVVHEMRVQRHRRI 105
           HF  +E R  RHRR+
Sbjct: 31  HFE-NEERADRHRRV 44


>AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.
          Length = 57

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 61  HFVVHEMRVQRHRRI 105
           HF  +E R  RHRR+
Sbjct: 6   HFE-NEERADRHRRV 19


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 8/30 (26%), Positives = 14/30 (46%)
 Frame = -2

Query: 134 LKSGLCTKNKIRL*RCTRISCTTKWRVNPI 45
           L+    +K + R+         T+W+ NPI
Sbjct: 398 LRDAFTSKGEYRMSTGEMKEAITQWQGNPI 427


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +3

Query: 12  ICAFRGYVQTPYWIHPPF 65
           IC F   ++TP +I+  F
Sbjct: 92  ICDFFMMIKTPIFIYNSF 109


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,758
Number of Sequences: 438
Number of extensions: 798
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 41
effective length of database: 128,385
effective search space used:  2567700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)