Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_M08
         (291 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    23   9.1  
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb...    23   9.1  
SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p...    23   9.1  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    23   9.1  
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|...    23   9.1  

>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1019

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 188 LFENIEKRSFPKCEGRGLSIMQEHLE 265
           LF N++   F  CEG  + ++  HL+
Sbjct: 703 LFSNMKHLFFQPCEGELIVLIHVHLK 728


>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 730

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 206 KRSFPKCEGRGLSIMQEHLEVS 271
           +R  P+ E RG++    HLE S
Sbjct: 642 RRGLPRLEVRGVAAFTNHLESS 663


>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 204 KNDLFLNVKEEDFQSCRSIWK 266
           KN L L V E++    RS+WK
Sbjct: 547 KNTLDLMVDEKEMARRRSVWK 567


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 186 TYLKI*KNDLFLNVKEEDFQSCRSIW 263
           T LKI +ND F   K  DF  CR  +
Sbjct: 64  TCLKIIRNDSFHCTKCFDFDVCRDCY 89


>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
           Mts4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = -2

Query: 194 QISSVMNNSELTHYFHY 144
           +++  +NN+ L+ +FHY
Sbjct: 313 ELNDALNNTHLSDHFHY 329


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,118,948
Number of Sequences: 5004
Number of extensions: 18813
Number of successful extensions: 44
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 69775820
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)