Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_M08
         (291 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0230 - 32518749-32519143,32519301-32519589                       28   1.1  
11_06_0076 - 19830482-19831258,19837352-19837613,19838073-19838485     26   5.8  
10_08_1005 - 22179407-22180122,22180210-22180653,22180737-221808...    26   5.8  
12_01_1011 + 10292709-10292765,10293003-10293156,10294062-102941...    25   7.7  
12_01_0268 - 1941515-1941534,1941868-1942057,1942155-1942322,194...    25   7.7  
04_04_0405 + 24969478-24969903,24971323-24971362,24971918-249719...    25   7.7  

>03_06_0230 - 32518749-32519143,32519301-32519589
          Length = 227

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 204 KNDLFLNVKEEDFQSCRSIWKFLE*W 281
           + DL  +V ++DF+S  +IW F E W
Sbjct: 111 ETDLVDSVTDKDFESDEAIWAFYERW 136


>11_06_0076 - 19830482-19831258,19837352-19837613,19838073-19838485
          Length = 483

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 173 YSSPNLFENIEKRSFPKCEGRGLSIMQEHLEVSGIVALE 289
           Y + N ++N    SFPKC   G+  ++  +   GIV LE
Sbjct: 355 YDNMNCYKNYFDPSFPKC---GIPTVKNDVYSFGIVLLE 390


>10_08_1005 -
           22179407-22180122,22180210-22180653,22180737-22180861,
           22180939-22181169,22181250-22181805,22181896-22182312,
           22182405-22183216,22183653-22183738,22184464-22184534,
           22184553-22185573,22186018-22186062,22186252-22186326,
           22186797-22186871
          Length = 1557

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = +2

Query: 92  RPSISIKKGGLFNESITCNENNVLIRSYSSPNLFENIEKRSFPKCEGRGLS 244
           RP  SIK G   N+  +      +++S   P + EN       K + +G++
Sbjct: 837 RPDSSIKSGDPRNDQDSPRPGPSILKSSKKPGIVENKHSSILSKSDEQGIT 887


>12_01_1011 +
           10292709-10292765,10293003-10293156,10294062-10294183,
           10294288-10294495,10294644-10294789,10294920-10295226,
           10295666-10296117,10296388-10296678
          Length = 578

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +2

Query: 101 ISIKKGGLFNESITCNENNVLIRSYSSPNLFENIEK 208
           +SI+    F  ++   E   + R Y SP    N+EK
Sbjct: 210 LSIESSSSFETTVDVEEGMEIDRGYISPQFVTNLEK 245


>12_01_0268 - 1941515-1941534,1941868-1942057,1942155-1942322,
            1943425-1943568,1944284-1944443,1944512-1944621,
            1944900-1945019,1945649-1945766,1946610-1946729,
            1947228-1947285,1947590-1947723,1949332-1949414,
            1949544-1949786,1949851-1949976,1950075-1951562
          Length = 1093

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 14/51 (27%), Positives = 21/51 (41%)
 Frame = +2

Query: 92   RPSISIKKGGLFNESITCNENNVLIRSYSSPNLFENIEKRSFPKCEGRGLS 244
            R  + +K+  L N S  C E    I+       +E I+KR   +    G S
Sbjct: 999  RKGMKLKQAHLSNSSTVCGEGGTNIQEEYMKAYYEAIQKRQEDRIRHSGQS 1049


>04_04_0405 +
           24969478-24969903,24971323-24971362,24971918-24971928,
           24973434-24974332,24974554-24974632
          Length = 484

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 185 NLFENIEKRSFPKCEGRGLSIMQEHLEVSGIVAL 286
           NLF ++ K ++ KC G  L +  +H    G+  L
Sbjct: 152 NLFASVAKVTYFKCGGVSLGVGMQHHVADGMSGL 185


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,365,004
Number of Sequences: 37544
Number of extensions: 95317
Number of successful extensions: 144
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 316296968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)