Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_M08
         (291 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74041-9|CAA98523.2|  801|Caenorhabditis elegans Hypothetical pr...    27   3.0  
Z74035-5|CAA98485.2|  801|Caenorhabditis elegans Hypothetical pr...    27   3.0  
Z30423-12|CAA83006.2|  486|Caenorhabditis elegans Hypothetical p...    27   3.0  
AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical...    27   3.0  
AF031935-1|AAB87066.1|  486|Caenorhabditis elegans UNC-47 protein.     27   3.0  
Z71181-6|CAA94899.1|  647|Caenorhabditis elegans Hypothetical pr...    25   6.8  
AF022982-5|AAB69936.2|  799|Caenorhabditis elegans Hypothetical ...    25   6.8  

>Z74041-9|CAA98523.2|  801|Caenorhabditis elegans Hypothetical
           protein F47G9.3 protein.
          Length = 801

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 140 TCNENNVLIRSYSSPNLFENIEKRSFPKC 226
           TCN  N L  SYS+P+  E+++     KC
Sbjct: 266 TCNSRNSLYISYSNPD--ESLKSECLEKC 292


>Z74035-5|CAA98485.2|  801|Caenorhabditis elegans Hypothetical
           protein F47G9.3 protein.
          Length = 801

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 140 TCNENNVLIRSYSSPNLFENIEKRSFPKC 226
           TCN  N L  SYS+P+  E+++     KC
Sbjct: 266 TCNSRNSLYISYSNPD--ESLKSECLEKC 292


>Z30423-12|CAA83006.2|  486|Caenorhabditis elegans Hypothetical
           protein T20G5.6 protein.
          Length = 486

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = +3

Query: 129 MNRLLVMKIMC*FGVIHHRTYLKI*KNDLFLNVKEEDFQSCRSIWKFLE*W 281
           +N +LV+K +  + +  +   +++ KN+LFL   +  F SC S  K L  W
Sbjct: 344 VNLILVVKALLSYPLPFYAA-VQLLKNNLFLGYPQTPFTSCYSPDKSLREW 393


>AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical
            protein Y66D12A.14 protein.
          Length = 2870

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -1

Query: 249  MIESPLPSHLGKDRFSIFSNKFGDE*LRINTLFSLQVIDS 130
            M+E      LGK  F +   +FGD    +  L+ LQ+ +S
Sbjct: 2677 MVEELKKRFLGKTNFILLDEEFGDTVDEVAKLYRLQIEES 2716


>AF031935-1|AAB87066.1|  486|Caenorhabditis elegans UNC-47 protein.
          Length = 486

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = +3

Query: 129 MNRLLVMKIMC*FGVIHHRTYLKI*KNDLFLNVKEEDFQSCRSIWKFLE*W 281
           +N +LV+K +  + +  +   +++ KN+LFL   +  F SC S  K L  W
Sbjct: 344 VNLILVVKALLSYPLPFYAA-VQLLKNNLFLGYPQTPFTSCYSPDKSLREW 393


>Z71181-6|CAA94899.1|  647|Caenorhabditis elegans Hypothetical
           protein K07C5.6 protein.
          Length = 647

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 244 NHAGAFGSFWNSG 282
           NH   FGSFW  G
Sbjct: 403 NHTSVFGSFWREG 415


>AF022982-5|AAB69936.2|  799|Caenorhabditis elegans Hypothetical
           protein T23B12.4 protein.
          Length = 799

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +2

Query: 179 SPNLFENIEKRSFPKCEGRGLS--IMQEHLEVSGIVA 283
           SPN  E++ K  F  C+G  L   +  EH  +S +++
Sbjct: 7   SPNESEDVSKTFFKLCDGLRLGELVTTEHFRLSDVMS 43


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,998,541
Number of Sequences: 27780
Number of extensions: 100298
Number of successful extensions: 221
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 280685548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)