Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_M07
(334 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 180 7e-47
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 180 7e-47
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 180 7e-47
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 46 2e-06
SPAC631.01c |acp2||F-actin capping protein beta subunit |Schizos... 27 0.57
SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces pom... 26 1.3
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 26 1.7
SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma... 26 1.7
SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase |Sch... 25 2.3
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 25 3.0
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 25 4.0
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 24 5.3
SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomy... 24 5.3
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual 24 5.3
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 23 9.2
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 23 9.2
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu... 23 9.2
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 180 bits (437), Expect = 7e-47
Identities = 79/109 (72%), Positives = 93/109 (85%)
Frame = +2
Query: 8 EEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTP 187
+ +PGDNVGFNVKNVSVK++RRG V GDSKN+PP G A FTAQVI+LNHPGQIS GY+P
Sbjct: 298 DAGLPGDNVGFNVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQVIILNHPGQISAGYSP 357
Query: 188 VLDCHFAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSK 334
VLDCH AHIACKFAE+ EK+DRR+GK E++PK +KSGDA I +VPSK
Sbjct: 358 VLDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSK 406
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 180 bits (437), Expect = 7e-47
Identities = 79/109 (72%), Positives = 93/109 (85%)
Frame = +2
Query: 8 EEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTP 187
+ +PGDNVGFNVKNVSVK++RRG V GDSKN+PP G A FTAQVI+LNHPGQIS GY+P
Sbjct: 298 DAGLPGDNVGFNVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQVIILNHPGQISAGYSP 357
Query: 188 VLDCHFAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSK 334
VLDCH AHIACKFAE+ EK+DRR+GK E++PK +KSGDA I +VPSK
Sbjct: 358 VLDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSK 406
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 180 bits (437), Expect = 7e-47
Identities = 79/109 (72%), Positives = 93/109 (85%)
Frame = +2
Query: 8 EEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTP 187
+ +PGDNVGFNVKNVSVK++RRG V GDSKN+PP G A FTAQVI+LNHPGQIS GY+P
Sbjct: 298 DAGLPGDNVGFNVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQVIILNHPGQISAGYSP 357
Query: 188 VLDCHFAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSK 334
VLDCH AHIACKFAE+ EK+DRR+GK E++PK +KSGDA I +VPSK
Sbjct: 358 VLDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSK 406
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 45.6 bits (103), Expect = 2e-06
Identities = 26/85 (30%), Positives = 43/85 (50%)
Frame = +2
Query: 14 AVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVL 193
++ GD V V+ +++ GYV +KN P F AQ+ +L P ++ GY+ V+
Sbjct: 524 SICGDQVRLRVRGDD-SDVQTGYVLTSTKN-PVHATTRFIAQIAILELPSILTTGYSCVM 581
Query: 194 DCHFAHIACKFAEIKEKVDRRTGKS 268
H A FA++ K+D+ KS
Sbjct: 582 HIHTAVEEVSFAKLLHKLDKTNRKS 606
>SPAC631.01c |acp2||F-actin capping protein beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 268
Score = 27.5 bits (58), Expect = 0.57
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = -2
Query: 312 MAASPDLMDLGLSSVDLPVRRSTFS 238
++ +PDL D+ LSSVD P++ +T S
Sbjct: 27 LSVAPDLADVLLSSVDQPLKVNTCS 51
>SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 163
Score = 26.2 bits (55), Expect = 1.3
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -1
Query: 256 TTVDFLFDFGKFAGYVGKVAIQYRCVSV*YLTWV 155
T +D+LF F+ +G + Y ++V Y+ WV
Sbjct: 73 TLIDYLFFSPPFSLSIGPSLLVYLSIAVSYMLWV 106
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 25.8 bits (54), Expect = 1.7
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +2
Query: 8 EEAVPGDNVGFNVKNVSVKELRRGYV 85
+ AV GDN G ++++ ++L+RG +
Sbjct: 309 DAAVAGDNCGLLLRSIKREQLKRGMI 334
>SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 396
Score = 25.8 bits (54), Expect = 1.7
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -2
Query: 297 DLMDLGLSSVDL--PVRRSTFSLISANLQAMWAKWQSNTGVY 178
+L LG++ + P +RST S ++ L W + N GVY
Sbjct: 316 ELSKLGVTIIGSKDPKKRSTHSYVAKILNPEWDAFLKNEGVY 357
>SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 25.4 bits (53), Expect = 2.3
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = -2
Query: 333 LEGTRLTMAASPDLMDLGLSSVDLPVRRSTFSLISANLQAMWAKWQSNTGVYPF 172
LE R ++ +L+D LSSV L + + S++S+ + + + G+ PF
Sbjct: 122 LEVKRTEGVSTTELLDRLLSSVPLEIYSTPVSVLSSQIDLLRRFATDSDGLTPF 175
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.0 bits (52), Expect = 3.0
Identities = 15/68 (22%), Positives = 34/68 (50%)
Frame = +3
Query: 21 PVTMLVSTSKTYLSRNCAVVTLQEIRKTTHPGELQTSQRKSLC*ITQVKYQTDTHLYWIA 200
P + +++ S + S + +VT ++ TTH +++T + T + D+H + +
Sbjct: 379 PTSSILTNSGSIKSGDHQIVTTSFVQTTTHGSQVETLTYVTTLTETILTTTYDSHTF-LT 437
Query: 201 TLPT*PAN 224
T+ P+N
Sbjct: 438 TITPSPSN 445
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 24.6 bits (51), Expect = 4.0
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +1
Query: 112 QGSCRLHSASHCAKSPRSNIKRIHTCIGLPLCPHSLQIC-RNQRESRP 252
+GS ++S + +S + I CIG+ PH +C R Q +P
Sbjct: 90 KGSTCAFTSSILQQIQKSGERSIPKCIGMYTSPHLRSVCERIQLNGKP 137
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 24.2 bits (50), Expect = 5.3
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -3
Query: 224 ICRLCGQSGNPIQVC 180
IC CGQ G+ IQ C
Sbjct: 184 ICYRCGQKGHWIQAC 198
>SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 581
Score = 24.2 bits (50), Expect = 5.3
Identities = 14/67 (20%), Positives = 29/67 (43%)
Frame = +3
Query: 3 TRKKLYPVTMLVSTSKTYLSRNCAVVTLQEIRKTTHPGELQTSQRKSLC*ITQVKYQTDT 182
T+ KL P +S + + L+R C + L + HP + + + + + Y ++
Sbjct: 165 TKIKLKPPQSPLSPTTSLLARKCKHIDLDTFSRLDHPNSDSSDETFEMEELPSLSYGSED 224
Query: 183 HLYWIAT 203
L + T
Sbjct: 225 LLEFCET 231
>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 578
Score = 24.2 bits (50), Expect = 5.3
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -1
Query: 85 NVTTAQFLDRYVFDVETNIVTGYS 14
++T F+D YV +++ IV G+S
Sbjct: 373 SLTDTSFMDDYVNELQLEIVPGFS 396
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 23.4 bits (48), Expect = 9.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 63 LTDTFLTLKPTLSPGTASSS 4
+T+TFL + PT S SSS
Sbjct: 1004 ITETFLQITPTQSRSNVSSS 1023
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 23.4 bits (48), Expect = 9.2
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 97 RISCNVTTAQFLDRYVFDVETNIVT 23
R+ C + LD+ D ETNIVT
Sbjct: 207 RVPCMSWSGNELDQVRIDEETNIVT 231
>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 23.4 bits (48), Expect = 9.2
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 149 LNHPGQISNGYTPVLDCHFAHIACK 223
L HP Q+SN +T C A AC+
Sbjct: 305 LPHPIQLSNYFTLPSSCAQADAACQ 329
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,541,385
Number of Sequences: 5004
Number of extensions: 31317
Number of successful extensions: 83
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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