Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_M07
(334 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0548 + 4099386-4099847,4100435-4101316 165 1e-41
03_01_0547 + 4093196-4093657,4094267-4095148 165 1e-41
03_01_0544 + 4082528-4082989,4083585-4084466 165 1e-41
03_01_0543 + 4076981-4077442,4078145-4079026 165 1e-41
02_03_0105 - 15254959-15255216,15256235-15256299,15257080-152572... 42 9e-05
09_02_0484 + 9804351-9805203,9806204-9806760,9807243-9807959 28 1.6
06_03_1311 - 29241884-29242054,29242802-29242879,29242968-292430... 28 2.1
11_06_0596 + 25385744-25388890 27 2.8
04_04_0436 + 25186144-25187915,25188020-25188077,25188472-25188888 27 2.8
12_02_1265 - 27435096-27437675 27 3.7
03_05_0010 + 19622430-19622512,19622539-19623082,19623361-196237... 27 3.7
01_07_0375 - 43152161-43152262,43152556-43152664,43153433-431535... 27 3.7
01_01_0677 + 5201089-5201177,5201325-5202183,5202321-5202794 27 3.7
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 27 4.9
11_01_0169 - 1365984-1366681,1368669-1368745,1369133-1369257,136... 27 4.9
02_01_0202 + 1366149-1366594,1368444-1368444,1368616-1368743,136... 27 4.9
11_03_0079 + 9669666-9669728,9670779-9672545 26 6.4
08_01_0851 + 8383043-8383301,8384654-8384824,8384907-8386420 26 8.5
06_03_1020 - 26942839-26943105,26944273-26944486,26945017-26945051 26 8.5
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 165 bits (400), Expect = 1e-41
Identities = 70/109 (64%), Positives = 92/109 (84%)
Frame = +2
Query: 8 EEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTP 187
+EA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P + AA FT+QVI++NHPGQI NGY P
Sbjct: 288 QEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASFTSQVIIMNHPGQIGNGYAP 347
Query: 188 VLDCHFAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSK 334
VLDCH +HIA KFAE+ K+DRR+GK E PK +K+GDA +V ++P+K
Sbjct: 348 VLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTK 396
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 165 bits (400), Expect = 1e-41
Identities = 70/109 (64%), Positives = 92/109 (84%)
Frame = +2
Query: 8 EEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTP 187
+EA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P + AA FT+QVI++NHPGQI NGY P
Sbjct: 288 QEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASFTSQVIIMNHPGQIGNGYAP 347
Query: 188 VLDCHFAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSK 334
VLDCH +HIA KFAE+ K+DRR+GK E PK +K+GDA +V ++P+K
Sbjct: 348 VLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTK 396
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 165 bits (400), Expect = 1e-41
Identities = 70/109 (64%), Positives = 92/109 (84%)
Frame = +2
Query: 8 EEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTP 187
+EA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P + AA FT+QVI++NHPGQI NGY P
Sbjct: 288 QEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASFTSQVIIMNHPGQIGNGYAP 347
Query: 188 VLDCHFAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSK 334
VLDCH +HIA KFAE+ K+DRR+GK E PK +K+GDA +V ++P+K
Sbjct: 348 VLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTK 396
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 165 bits (400), Expect = 1e-41
Identities = 70/109 (64%), Positives = 92/109 (84%)
Frame = +2
Query: 8 EEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTP 187
+EA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P + AA FT+QVI++NHPGQI NGY P
Sbjct: 288 QEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASFTSQVIIMNHPGQIGNGYAP 347
Query: 188 VLDCHFAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSK 334
VLDCH +HIA KFAE+ K+DRR+GK E PK +K+GDA +V ++P+K
Sbjct: 348 VLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTK 396
>02_03_0105 -
15254959-15255216,15256235-15256299,15257080-15257215,
15257314-15257419,15257642-15257792,15258817-15258881,
15258980-15259134,15259219-15259281,15259846-15259917,
15260364-15260408
Length = 371
Score = 42.3 bits (95), Expect = 9e-05
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 2/96 (2%)
Frame = +2
Query: 14 AVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLN--HPGQISNGYTP 187
A PG+NV + + ++ G+V K NP ++F AQ+ +L + GY
Sbjct: 237 AAPGENVRVKLSGIEEDDITAGFVLSSIK-NPVSAISEFRAQLQILELLDNAIFTAGYKA 295
Query: 188 VLDCHFAHIACKFAEIKEKVDRRTGKSTEDNPKSIK 295
VL H C+ E+ E++D + K + K K
Sbjct: 296 VLHIHSVVEECEIVELIEEIDLKRRKEGDIKKKKSK 331
>09_02_0484 + 9804351-9805203,9806204-9806760,9807243-9807959
Length = 708
Score = 28.3 bits (60), Expect = 1.6
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = -2
Query: 306 ASPDLMDLGLSSVDLPVRRSTFSL 235
A+ DLM G+S V+LPVRR+ F++
Sbjct: 580 ATLDLMYSGISMVNLPVRRNHFAV 603
>06_03_1311 -
29241884-29242054,29242802-29242879,29242968-29243049,
29243141-29243212,29243316-29243437,29243541-29243596,
29244264-29244333,29244435-29244518,29244599-29244667,
29244855-29244928,29245014-29245125,29245220-29245510
Length = 426
Score = 27.9 bits (59), Expect = 2.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 228 PKSKRKSTVVLVNQQRTTLNPLNLVMP 308
P+ R+S + Q TT++P NLV+P
Sbjct: 103 PRRNRRSPALRAAFQETTISPANLVLP 129
>11_06_0596 + 25385744-25388890
Length = 1048
Score = 27.5 bits (58), Expect = 2.8
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 231 KSKRKSTVVLVNQQRTTLNPLNLVMPPLSTW 323
K+ K +N+ TTL L++ M P+S+W
Sbjct: 832 KANLKDLFAQINKLHTTLRSLSIRMKPVSSW 862
>04_04_0436 + 25186144-25187915,25188020-25188077,25188472-25188888
Length = 748
Score = 27.5 bits (58), Expect = 2.8
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 71 RRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGY 181
RRG +++ PR +A + QV+ HP +S GY
Sbjct: 175 RRGSNCVENRRRKPRSSAQSSPQVVTPRHP--VSEGY 209
>12_02_1265 - 27435096-27437675
Length = 859
Score = 27.1 bits (57), Expect = 3.7
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Frame = +2
Query: 2 HEEEAVPGDNVGFN--VKNVSVKELRR-GYV-AGDSKNNPPRGAADFTAQVIVLNHPGQI 169
H + ++P + +N V+N K + R GY + S + PP A+ +Q+ HPGQ
Sbjct: 182 HNQHSLPEAKMPYNPSVQNNLGKGVSRSGYAKSNQSFSGPPAMVANSPSQIKNQRHPGQR 241
Query: 170 SNGY 181
Y
Sbjct: 242 HTNY 245
>03_05_0010 +
19622430-19622512,19622539-19623082,19623361-19623767,
19623831-19624167,19624290-19624508,19625522-19625826,
19626128-19626287,19626422-19626547
Length = 726
Score = 27.1 bits (57), Expect = 3.7
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +2
Query: 233 IKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPS 331
IKE + R GKST D P +G I PS
Sbjct: 207 IKEAITTRGGKSTRDPPYPNPTGTNGIAREAPS 239
>01_07_0375 -
43152161-43152262,43152556-43152664,43153433-43153504,
43153690-43153834,43153930-43154085,43154557-43154618,
43154695-43155020
Length = 323
Score = 27.1 bits (57), Expect = 3.7
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -2
Query: 54 TFLTLKPTLSPGTASSSC 1
T L L PTL P ++SSSC
Sbjct: 39 TLLLLNPTLPPNSSSSSC 56
>01_01_0677 + 5201089-5201177,5201325-5202183,5202321-5202794
Length = 473
Score = 27.1 bits (57), Expect = 3.7
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = -2
Query: 141 TCAVKSAAPLGGLFFESPAT*PRRNSLTDTFLTLKPTLSPGT 16
+ + A P G + RR L D+FL LK L PG+
Sbjct: 274 SASAAEAPPSGNQLQHMISERKRREKLNDSFLALKAVLPPGS 315
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 26.6 bits (56), Expect = 4.9
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +1
Query: 91 RFEKQPTQGSCRLHSASHCAKSPRSNIKRIHTCIGLPLCPHS 216
RF+ + S + C+ S R+++ +HT + +PL P S
Sbjct: 373 RFQTTDEKQSVQRRLWVRCSISTRAHLHGVHTRVAMPLLPAS 414
>11_01_0169 -
1365984-1366681,1368669-1368745,1369133-1369257,
1369338-1369426,1370041-1370126,1370705-1370970
Length = 446
Score = 26.6 bits (56), Expect = 4.9
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -1
Query: 331 GGNQVDNGGITRFNGF 284
GGN +DN G+T +N F
Sbjct: 379 GGNSMDNSGVTEYNLF 394
>02_01_0202 +
1366149-1366594,1368444-1368444,1368616-1368743,
1368943-1369039
Length = 223
Score = 26.6 bits (56), Expect = 4.9
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = +2
Query: 23 GDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVL 193
GD+ G V RR V GD + P + DF V++L H S+GY +L
Sbjct: 20 GDSGGGEAPAAEVLRRRRVPVPGDGLSPIPMFSVDFRLFVLILPH----SHGYLVLL 72
>11_03_0079 + 9669666-9669728,9670779-9672545
Length = 609
Score = 26.2 bits (55), Expect = 6.4
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +2
Query: 128 FTAQVIVLNHPGQISNGYTPVLDCHFAHIACKFAEIKEKVD 250
FTA+ +H Q++N VLDC AH+ CK+ + E ++
Sbjct: 572 FTAENRSKSH--QVNN-VLAVLDCLQAHMECKYDMLTESLE 609
>08_01_0851 + 8383043-8383301,8384654-8384824,8384907-8386420
Length = 647
Score = 25.8 bits (54), Expect = 8.5
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2
Query: 128 FTAQVIVLNHPGQISNGYTPVLDCHFAHIACKFAEIKEKVD 250
FTA+ +H Q++N +LDC AH+ CK+ + E ++
Sbjct: 610 FTAENRSKSH--QVNN-VLAILDCLQAHMECKYDMLTESLE 647
>06_03_1020 - 26942839-26943105,26944273-26944486,26945017-26945051
Length = 171
Score = 25.8 bits (54), Expect = 8.5
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -2
Query: 150 STMTCAVKSAAPLGGLF 100
ST TC +KS APL G F
Sbjct: 51 STNTCTIKSEAPLKGPF 67
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,551,778
Number of Sequences: 37544
Number of extensions: 225999
Number of successful extensions: 564
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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