Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_M07
(334 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 178 9e-46
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 178 9e-46
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 178 9e-46
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 49 7e-07
AC006816-6|ABA00154.1| 506|Caenorhabditis elegans Hypothetical ... 29 1.1
U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore co... 27 2.5
Z81061-7|CAB02939.2| 819|Caenorhabditis elegans Hypothetical pr... 27 3.3
Z78413-11|CAB01667.2| 819|Caenorhabditis elegans Hypothetical p... 27 3.3
U97003-7|AAB52274.1| 357|Caenorhabditis elegans Hypothetical pr... 27 3.3
U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like p... 27 3.3
U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like p... 27 3.3
AC024826-6|AAF60801.1| 379|Caenorhabditis elegans Hypothetical ... 27 3.3
AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like ... 27 3.3
Z71265-6|CAA95837.1| 399|Caenorhabditis elegans Hypothetical pr... 27 4.3
Z71258-17|CAA95787.1| 399|Caenorhabditis elegans Hypothetical p... 27 4.3
U61948-1|AAB03144.2| 1432|Caenorhabditis elegans Hypothetical pr... 27 4.3
U30248-1|AAC13874.1| 399|Caenorhabditis elegans transcription f... 27 4.3
U13614-1|AAA21347.1| 399|Caenorhabditis elegans protein ( Caeno... 27 4.3
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 27 4.3
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 27 4.3
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 27 4.3
AC024746-12|AAF60401.1| 142|Caenorhabditis elegans Hypothetical... 27 4.3
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 26 5.7
AF022977-3|AAB88609.1| 554|Caenorhabditis elegans Hypothetical ... 26 5.7
Z92825-1|CAB07313.1| 415|Caenorhabditis elegans Hypothetical pr... 26 7.5
AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical ... 26 7.5
Z83117-6|CAN86902.1| 1931|Caenorhabditis elegans Hypothetical pr... 25 10.0
Z83117-5|CAN86901.1| 1971|Caenorhabditis elegans Hypothetical pr... 25 10.0
Z83117-4|CAB05572.2| 2032|Caenorhabditis elegans Hypothetical pr... 25 10.0
Z81568-9|CAB04599.2| 386|Caenorhabditis elegans Hypothetical pr... 25 10.0
Z80219-10|CAN86596.1| 1931|Caenorhabditis elegans Hypothetical p... 25 10.0
Z80219-9|CAN86595.1| 1971|Caenorhabditis elegans Hypothetical pr... 25 10.0
Z80219-8|CAB02303.2| 2032|Caenorhabditis elegans Hypothetical pr... 25 10.0
AJ276020-1|CAC81668.1| 1971|Caenorhabditis elegans putative TRP ... 25 10.0
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 178 bits (433), Expect = 9e-46
Identities = 81/108 (75%), Positives = 91/108 (84%)
Frame = +2
Query: 11 EAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPV 190
EAVPGDNVGFNVKNVSVK++RRG V DSK +P + A F AQVI++NHPGQISNGYTPV
Sbjct: 267 EAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPV 326
Query: 191 LDCHFAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSK 334
LDCH AHIACKF E+KEKVDRRTGK ED PK +KSGDA IV L+P+K
Sbjct: 327 LDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTK 374
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 178 bits (433), Expect = 9e-46
Identities = 81/108 (75%), Positives = 91/108 (84%)
Frame = +2
Query: 11 EAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPV 190
EAVPGDNVGFNVKNVSVK++RRG V DSK +P + A F AQVI++NHPGQISNGYTPV
Sbjct: 301 EAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPV 360
Query: 191 LDCHFAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSK 334
LDCH AHIACKF E+KEKVDRRTGK ED PK +KSGDA IV L+P+K
Sbjct: 361 LDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTK 408
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 178 bits (433), Expect = 9e-46
Identities = 81/108 (75%), Positives = 91/108 (84%)
Frame = +2
Query: 11 EAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPV 190
EAVPGDNVGFNVKNVSVK++RRG V DSK +P + A F AQVI++NHPGQISNGYTPV
Sbjct: 301 EAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPV 360
Query: 191 LDCHFAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSK 334
LDCH AHIACKF E+KEKVDRRTGK ED PK +KSGDA IV L+P+K
Sbjct: 361 LDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTK 408
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 49.2 bits (112), Expect = 7e-07
Identities = 30/105 (28%), Positives = 51/105 (48%)
Frame = +2
Query: 8 EEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTP 187
E V GDN+ F +K + EL+ G++ + G F A+V+VL H I++GY+
Sbjct: 392 ERVVAGDNIKFKLKGIEENELQGGFIICSPDSLAKTGRV-FDAEVLVLEHRSIIASGYSC 450
Query: 188 VLDCHFAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNL 322
VL A + +D++TG+ + K +K + I+ L
Sbjct: 451 VLHIQSAVEEVTVKGVIATIDKKTGE--KKRAKFVKQDEKCIMRL 493
>AC006816-6|ABA00154.1| 506|Caenorhabditis elegans Hypothetical
protein Y71D11A.1 protein.
Length = 506
Score = 28.7 bits (61), Expect = 1.1
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 225 LPKSKRKSTVVLVNQQRTTLNPLNLVMPPLSTWFPP 332
LPK+ T V + TT+ P +PP +T PP
Sbjct: 264 LPKTTVAPTTTTVPRTTTTVPPTTTTVPPTTTTVPP 299
>U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore
complex protein protein11 protein.
Length = 805
Score = 27.5 bits (58), Expect = 2.5
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -2
Query: 141 TCAVKSAAPLGGLFFESPAT*PRRNSLTDTFLTLKPTLSPGTASS 7
T A +AAP GGLF + T P T T +P TA++
Sbjct: 468 TTAPAAAAPTGGLFGAATTTAPATVGPTGGLFGAATTTTPATAAT 512
>Z81061-7|CAB02939.2| 819|Caenorhabditis elegans Hypothetical
protein T01C3.10 protein.
Length = 819
Score = 27.1 bits (57), Expect = 3.3
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = +2
Query: 98 KNNPPRGAAD-FTAQVIVLNHP 160
K NPP+GAAD F +V+ L+ P
Sbjct: 279 KANPPQGAADKFHVKVVTLHEP 300
>Z78413-11|CAB01667.2| 819|Caenorhabditis elegans Hypothetical
protein T01C3.10 protein.
Length = 819
Score = 27.1 bits (57), Expect = 3.3
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = +2
Query: 98 KNNPPRGAAD-FTAQVIVLNHP 160
K NPP+GAAD F +V+ L+ P
Sbjct: 279 KANPPQGAADKFHVKVVTLHEP 300
>U97003-7|AAB52274.1| 357|Caenorhabditis elegans Hypothetical
protein F47C10.4 protein.
Length = 357
Score = 27.1 bits (57), Expect = 3.3
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 108 HPGELQTSQRKSLC*ITQVKYQTDTHLYWI 197
H G + ++ SLC +T Y+ +LYWI
Sbjct: 311 HNGSSRFTELLSLCTVTNKYYEDVQYLYWI 340
>U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform b protein.
Length = 564
Score = 27.1 bits (57), Expect = 3.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 191 LDCHFAHIACKFAEIKEKVDRRTGKSTE 274
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform a protein.
Length = 690
Score = 27.1 bits (57), Expect = 3.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 191 LDCHFAHIACKFAEIKEKVDRRTGKSTE 274
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>AC024826-6|AAF60801.1| 379|Caenorhabditis elegans Hypothetical
protein Y55F3AM.9 protein.
Length = 379
Score = 27.1 bits (57), Expect = 3.3
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = +2
Query: 227 AEIKEKVDRRTGKSTEDNPKS 289
AEI + +D+ GKSTE++P++
Sbjct: 27 AEILQSLDKSLGKSTEESPEA 47
>AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like
protein protein.
Length = 690
Score = 27.1 bits (57), Expect = 3.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 191 LDCHFAHIACKFAEIKEKVDRRTGKSTE 274
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>Z71265-6|CAA95837.1| 399|Caenorhabditis elegans Hypothetical
protein M05B5.5a protein.
Length = 399
Score = 26.6 bits (56), Expect = 4.3
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -2
Query: 93 SPAT*PRRNSLTDTFLTLKPTLSPGTASS 7
+P+T P S TD L LKPT +P T S+
Sbjct: 105 APSTAPAPTSTTDV-LELKPTTAPATNSA 132
>Z71258-17|CAA95787.1| 399|Caenorhabditis elegans Hypothetical
protein M05B5.5a protein.
Length = 399
Score = 26.6 bits (56), Expect = 4.3
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -2
Query: 93 SPAT*PRRNSLTDTFLTLKPTLSPGTASS 7
+P+T P S TD L LKPT +P T S+
Sbjct: 105 APSTAPAPTSTTDV-LELKPTTAPATNSA 132
>U61948-1|AAB03144.2| 1432|Caenorhabditis elegans Hypothetical protein
C46A5.4 protein.
Length = 1432
Score = 26.6 bits (56), Expect = 4.3
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 8 EEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRG 118
+EA+P N + ++V RR +VAGD ++N G
Sbjct: 983 KEALPQGNQERDCRSVLQNRQRRCFVAGDERSNEQPG 1019
>U30248-1|AAC13874.1| 399|Caenorhabditis elegans transcription
factor E12/47 homolog protein.
Length = 399
Score = 26.6 bits (56), Expect = 4.3
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -2
Query: 93 SPAT*PRRNSLTDTFLTLKPTLSPGTASS 7
+P+T P S TD L LKPT +P T S+
Sbjct: 105 APSTAPAPTSTTDV-LELKPTTAPATNSA 132
>U13614-1|AAA21347.1| 399|Caenorhabditis elegans protein (
Caenorhabditis elegansN2 basic-helix-loop-helix
transcription factor E12/47homolog mRNA, complete cds.
).
Length = 399
Score = 26.6 bits (56), Expect = 4.3
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -2
Query: 93 SPAT*PRRNSLTDTFLTLKPTLSPGTASS 7
+P+T P S TD L LKPT +P T S+
Sbjct: 105 APSTAPAPTSTTDV-LELKPTTAPATNSA 132
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 26.6 bits (56), Expect = 4.3
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +2
Query: 8 EEAVPGDNVGFNVKNVSVKELRRGYV 85
++A PGD +G ++ + K++RRG V
Sbjct: 311 DQAEPGDQLGVLLRGLGPKDVRRGCV 336
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 26.6 bits (56), Expect = 4.3
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +2
Query: 8 EEAVPGDNVGFNVKNVSVKELRRGYV 85
++A PGD +G ++ + K++RRG V
Sbjct: 312 DQAEPGDQLGVLLRGLGPKDVRRGCV 337
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 26.6 bits (56), Expect = 4.3
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +2
Query: 8 EEAVPGDNVGFNVKNVSVKELRRGYV 85
++A PGD +G ++ + K++RRG V
Sbjct: 312 DQAEPGDQLGVLLRGLGPKDVRRGCV 337
>AC024746-12|AAF60401.1| 142|Caenorhabditis elegans Hypothetical
protein Y110A2AL.1 protein.
Length = 142
Score = 26.6 bits (56), Expect = 4.3
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +2
Query: 71 RRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQI 169
RR Y D P+GA DF AQ++ PG I
Sbjct: 64 RRHYF--DLHGMTPQGAVDFVAQIVEGRRPGYI 94
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 26.2 bits (55), Expect = 5.7
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 20 PGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNH 157
PG+ ++ LRRG V + + PP +FTA +++L H
Sbjct: 465 PGEAASISLNLPDGVSLRRGMVLAEIDHQPP-VCYEFTANLLLLCH 509
>AF022977-3|AAB88609.1| 554|Caenorhabditis elegans Hypothetical
protein ZK994.1 protein.
Length = 554
Score = 26.2 bits (55), Expect = 5.7
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -1
Query: 85 NVTTAQFLDRYVFDVETN 32
N TTA FLD Y+F V T+
Sbjct: 384 NSTTATFLDDYIFHVPTS 401
>Z92825-1|CAB07313.1| 415|Caenorhabditis elegans Hypothetical
protein C13C4.1 protein.
Length = 415
Score = 25.8 bits (54), Expect = 7.5
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 157 PRSNIKRIHTCIGLPLCPHSLQICRN 234
P+ N ++I+ + CP QICRN
Sbjct: 9 PKRNRRKIYKILPQNQCPSVCQICRN 34
>AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical
protein Y18D10A.1 protein.
Length = 1634
Score = 25.8 bits (54), Expect = 7.5
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 137 QVIVLNHPGQISNGYTPVLDCHFAHIACKFAEIKE 241
Q+++LNHP QI +L A C+F ++E
Sbjct: 1375 QILLLNHPNQIGKSTCYILMSDVAKY-CRFLVVEE 1408
>Z83117-6|CAN86902.1| 1931|Caenorhabditis elegans Hypothetical
protein T01H8.5d protein.
Length = 1931
Score = 25.4 bits (53), Expect = 10.0
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +1
Query: 40 QRQKRICQGIAPW 78
QR K +C GIAPW
Sbjct: 380 QRNKIVCIGIAPW 392
>Z83117-5|CAN86901.1| 1971|Caenorhabditis elegans Hypothetical
protein T01H8.5c protein.
Length = 1971
Score = 25.4 bits (53), Expect = 10.0
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +1
Query: 40 QRQKRICQGIAPW 78
QR K +C GIAPW
Sbjct: 420 QRNKIVCIGIAPW 432
>Z83117-4|CAB05572.2| 2032|Caenorhabditis elegans Hypothetical
protein T01H8.5a protein.
Length = 2032
Score = 25.4 bits (53), Expect = 10.0
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +1
Query: 40 QRQKRICQGIAPW 78
QR K +C GIAPW
Sbjct: 481 QRNKIVCIGIAPW 493
>Z81568-9|CAB04599.2| 386|Caenorhabditis elegans Hypothetical
protein K08E3.7 protein.
Length = 386
Score = 25.4 bits (53), Expect = 10.0
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -1
Query: 133 CEVCSSPGWVVFRISCNVTTAQFLDR 56
C VC V+F + CN T QF R
Sbjct: 191 CCVCDGKEKVIFDLGCNHITCQFCFR 216
>Z80219-10|CAN86596.1| 1931|Caenorhabditis elegans Hypothetical
protein T01H8.5d protein.
Length = 1931
Score = 25.4 bits (53), Expect = 10.0
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +1
Query: 40 QRQKRICQGIAPW 78
QR K +C GIAPW
Sbjct: 380 QRNKIVCIGIAPW 392
>Z80219-9|CAN86595.1| 1971|Caenorhabditis elegans Hypothetical
protein T01H8.5c protein.
Length = 1971
Score = 25.4 bits (53), Expect = 10.0
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +1
Query: 40 QRQKRICQGIAPW 78
QR K +C GIAPW
Sbjct: 420 QRNKIVCIGIAPW 432
>Z80219-8|CAB02303.2| 2032|Caenorhabditis elegans Hypothetical
protein T01H8.5a protein.
Length = 2032
Score = 25.4 bits (53), Expect = 10.0
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +1
Query: 40 QRQKRICQGIAPW 78
QR K +C GIAPW
Sbjct: 481 QRNKIVCIGIAPW 493
>AJ276020-1|CAC81668.1| 1971|Caenorhabditis elegans putative TRP
homologous cationchannel protein.
Length = 1971
Score = 25.4 bits (53), Expect = 10.0
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +1
Query: 40 QRQKRICQGIAPW 78
QR K +C GIAPW
Sbjct: 420 QRNKIVCIGIAPW 432
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,805,806
Number of Sequences: 27780
Number of extensions: 192921
Number of successful extensions: 582
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 408121444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -