Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_M05
         (248 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   1.9  
SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces pom...    24   3.4  
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos...    23   4.5  
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy...    23   4.5  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    23   7.8  
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    23   7.8  
SPBC28F2.06c |mdm12||Mdm10/Mdm12/Mmm1 complex subunit Mdm12|Schi...    23   7.8  
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo...    23   7.8  

>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 195 VSASNLPSPLPLKFTNSSGN 136
           V  SN+P P P   TN+S N
Sbjct: 393 VQNSNMPPPAPRPVTNNSSN 412


>SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 220

 Score = 23.8 bits (49), Expect = 3.4
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -1

Query: 209 KKRASCLLAISPAHCHLSLPILRAMSVTLVLL 114
           +KRA+     +PA   LS PI+R   +TL+L+
Sbjct: 101 EKRAALFPYFTPAQAFLSQPIIR-QYLTLLLI 131


>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 400

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 213 SEKTGVVSASNLPSPLPLKFTNSSGNVGY 127
           S  T +V  ++ PSPLPL F +   N  Y
Sbjct: 348 SFSTNIVQCAS-PSPLPLSFRSPVPNKDY 375


>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 31  GLVRKLKGQWRAMLGVSL 84
           G  RKL+G WR   G++L
Sbjct: 225 GHYRKLEGVWRLQFGLAL 242


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = +1

Query: 127  VTDIARRIGKLKWQWAGEIASRHDARFFRKG-LEWL 231
            +TD+   IG+  W+   EI      RF     ++WL
Sbjct: 901  ITDLLNVIGRKIWKKLAEILGYTSRRFLSSAEVKWL 936


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -3

Query: 225 FETLSEKTGVVSASNLPSPLPLKFTNSSGNVGYFGSSAD 109
           F      T   S+++ P P+    +NS  +V    SSAD
Sbjct: 138 FSLTPSTTPPPSSASAPFPINSNISNSLDSVSQHNSSAD 176


>SPBC28F2.06c |mdm12||Mdm10/Mdm12/Mmm1 complex subunit
           Mdm12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 273

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 225 FETLSEKTGVVSASNLPSPLP 163
           F       G++SAS L SP+P
Sbjct: 109 FNPAFNSPGILSASGLTSPIP 129


>SPBC27.02c |ask1|mug181|DASH complex subunit
           Ask1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -3

Query: 210 EKTGVVSASNLPSPLPLKFTNSSGNVGYFGSSADLRIPDSITQ*NSKHS 64
           E +  VS S +  P+P++   S  +V    + ADL++         +HS
Sbjct: 62  EASANVSLSGVEEPVPVESNPSDQDVMSNSTEADLQLHTKNEHLEKRHS 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,028,585
Number of Sequences: 5004
Number of extensions: 17142
Number of successful extensions: 34
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 45369236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)