Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_M05
(248 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0692 - 5700394-5700474,5700546-5702675,5705033-5706169,570... 29 0.52
08_01_0183 - 1537906-1539141 27 2.1
06_03_1489 + 30492702-30493760 27 2.1
05_04_0250 + 19370155-19370690,19370888-19370948,19371240-193712... 26 3.7
05_01_0002 - 8097-8246,8384-8495,8572-8735,9367-9519,9603-9732,9... 26 3.7
04_03_0477 - 16393764-16394054,16394424-16394672,16394849-163949... 26 4.8
07_03_0654 + 20299471-20299671,20299968-20300231 25 6.4
06_01_0801 - 5993726-5994160,5994811-5994969,5995071-5995211,599... 25 6.4
04_04_0886 - 29089083-29089211,29089702-29089890,29089968-290901... 25 6.4
03_02_0099 - 5614007-5614233,5614725-5614998,5615086-5616179,561... 25 6.4
04_04_1273 - 32307273-32307569,32307659-32307791,32307874-323081... 25 8.5
04_03_0465 - 16227552-16227842,16227993-16228217,16228342-162284... 25 8.5
>11_01_0692 -
5700394-5700474,5700546-5702675,5705033-5706169,
5709679-5709975
Length = 1214
Score = 29.1 bits (62), Expect = 0.52
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 189 ASNLPSPLPLKFTNSSGNVGYFGSSADL 106
A L S + LK+ N SG++ Y GSS D+
Sbjct: 753 AQGLNSLINLKYLNLSGSLNYLGSSIDI 780
>08_01_0183 - 1537906-1539141
Length = 411
Score = 27.1 bits (57), Expect = 2.1
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = -3
Query: 246 FSGTW*PFETLSEKTGVVSASNL--PSPLPLKFT 151
F+G PF + EK GVV + + P+P P +FT
Sbjct: 111 FTGDEIPFHSFPEKHGVVMSKVVFAPNPTPAEFT 144
>06_03_1489 + 30492702-30493760
Length = 352
Score = 27.1 bits (57), Expect = 2.1
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -3
Query: 246 FSGTW*PFETLSEKTGVVSASNLPSPLPLKFTNSSGNVG-YFGSSADLRIPDS 91
F+G P +E GV+ A N SP P F S+ G G S++L +P S
Sbjct: 159 FTGPKRPRTIAAENGGVLDACNGSSPYPPTFEVSTITNGCSLGQSSELPVPFS 211
>05_04_0250 +
19370155-19370690,19370888-19370948,19371240-19371261,
19372395-19372452,19372580-19372652,19372907-19372999
Length = 280
Score = 26.2 bits (55), Expect = 3.7
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Frame = -3
Query: 201 GVVSASNLPSPLPLKFTNSSGNVGYFGSSADLRIP---DSITQ*N-SKHSPPLPFELSY* 34
G S + SPL N+ Y+GS +R+P D I + S+ P P +
Sbjct: 69 GEPSQNKKGSPLLGGIANTKSWSQYYGSGFSIRVPPSFDDILEPEVSRLLPMSPCAFGFL 128
Query: 33 AHCKRLR 13
HC R R
Sbjct: 129 RHCSRAR 135
>05_01_0002 -
8097-8246,8384-8495,8572-8735,9367-9519,9603-9732,
9802-9902,10016-10651,10820-10899,11014-11673,
11787-12041,12154-12281,12515-12669,12735-12919,
13020-13049,13164-13239,13371-13504,13703-13994,
14400-14567,14647-14745,14843-15014,15103-15281
Length = 1352
Score = 26.2 bits (55), Expect = 3.7
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -3
Query: 207 KTGVVSASNLPSPLPLKFTNSSGNVGYFGSSADLRIPDSITQ*NSKHSP 61
K G+ + S P+ + GN GS ++RIP S ++KH P
Sbjct: 843 KPGINACSATPAGGEVVSEAKGGNEAIMGSG-EIRIPGSFNSKDNKHCP 890
>04_03_0477 -
16393764-16394054,16394424-16394672,16394849-16394989,
16395654-16395795,16396287-16396665,16397178-16397436,
16398232-16398288
Length = 505
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +3
Query: 12 DVVAYNGPSKKAQRAMEGYAWSF 80
D+ Y G S R +EGY WS+
Sbjct: 236 DLYGYMGLSYIRDRTIEGYTWSY 258
>07_03_0654 + 20299471-20299671,20299968-20300231
Length = 154
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 123 GSSADLRIPDSITQ*NSKHSPP 58
G++A RIP S Q +HSPP
Sbjct: 3 GAAAAARIPASYQQQQQEHSPP 24
>06_01_0801 -
5993726-5994160,5994811-5994969,5995071-5995211,
5995999-5996097,5996180-5996542,5996929-5997150,
5997257-5997448,5997997-5998056,5998162-5998378,
5998471-5998523,5999013-5999084,5999928-6000113,
6000986-6001132,6002902-6003075,6003149-6003300,
6004269-6004360,6004549-6004710,6004875-6005053,
6005173-6005304,6005454-6005507,6006082-6006191,
6006317-6006487,6006577-6006663,6008488-6008611,
6009355-6009564
Length = 1330
Score = 25.4 bits (53), Expect = 6.4
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -3
Query: 225 FETLSEKTGVVSASNLPSPLPLKFTNSSG 139
F+ L+EK+G+ S+ PSP K TN+ G
Sbjct: 670 FDRLTEKSGLGSSPQAPSP-SNKQTNAQG 697
>04_04_0886 -
29089083-29089211,29089702-29089890,29089968-29090121,
29090389-29090489,29090970-29091020,29092606-29092761
Length = 259
Score = 25.4 bits (53), Expect = 6.4
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1
Query: 203 RASCLLAISPAHCHLSLPILRAMSVTLVLLR 111
RA+ ++ + AHCHL P R +SV L+R
Sbjct: 7 RAASVVRLFDAHCHLQDP--RVLSVAPSLIR 35
>03_02_0099 -
5614007-5614233,5614725-5614998,5615086-5616179,
5616674-5616772,5617371-5617389
Length = 570
Score = 25.4 bits (53), Expect = 6.4
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = -1
Query: 131 VTLVLLRISAFLIRSRSETPSIALHCPLSFLTRPIVSD 18
+TL +S L TPSI L CPLS + PI+ D
Sbjct: 105 ITLQQTPLSVRLHPGGPSTPSICLACPLS--SAPILVD 140
>04_04_1273 -
32307273-32307569,32307659-32307791,32307874-32308105,
32308220-32308436,32308594-32308718,32309416-32310757
Length = 781
Score = 25.0 bits (52), Expect = 8.5
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -3
Query: 201 GVVSASNLPSPLPLKFTNSSGNVGY-FGSSA 112
GV ASN PL+ T+S+ V Y +GS A
Sbjct: 234 GVPEASNYSDKFPLQVTSSAREVTYGYGSVA 264
>04_03_0465 -
16227552-16227842,16227993-16228217,16228342-16228477,
16229756-16229974,16230269-16230569,16231865-16232108
Length = 471
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 12 DVVAYNGPSKKAQRAMEGYAWS 77
D+ Y G + RA+EGY WS
Sbjct: 186 DLYTYVGLNYARDRAVEGYLWS 207
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,322,291
Number of Sequences: 37544
Number of extensions: 137547
Number of successful extensions: 322
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 322
length of database: 14,793,348
effective HSP length: 61
effective length of database: 12,503,164
effective search space used: 262566444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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