Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_M05
(248 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC025724-1|AAH25724.1| 316|Homo sapiens retinol dehydrogenase 1... 29 3.6
AK054835-1|BAB70811.1| 316|Homo sapiens (ARSDR1) mRNA. protein. 29 3.6
Z83820-2|CAI42458.1| 263|Homo sapiens apolipoprotein O-like pro... 28 4.8
BC107096-1|AAI07097.1| 268|Homo sapiens apolipoprotein O-like p... 28 4.8
AY358193-1|AAQ88560.1| 268|Homo sapiens AAIR8193 protein. 28 4.8
U34806-1|AAC50826.1| 360|Homo sapiens G protein-coupled recepto... 28 6.3
BC101781-1|AAI01782.1| 360|Homo sapiens G protein-coupled recep... 28 6.3
BC101779-1|AAI01780.1| 360|Homo sapiens G protein-coupled recep... 28 6.3
BC069437-1|AAH69437.1| 360|Homo sapiens G protein-coupled recep... 28 6.3
X52997-1|CAA37186.1| 177|Homo sapiens protein ( Human mRNA for ... 27 8.3
M80478-1|AAB40042.1| 177|Homo sapiens platelet glycoprotein IX ... 27 8.3
D88290-1|BAA13580.1| 84|Homo sapiens platelet glycoprotein IX ... 27 8.3
BC030644-1|AAH30644.1| 641|Homo sapiens regulatory factor X, 4 ... 27 8.3
BC030229-1|AAH30229.1| 177|Homo sapiens glycoprotein IX (platel... 27 8.3
BC028582-1|AAH28582.1| 641|Homo sapiens regulatory factor X, 4 ... 27 8.3
AY102009-1|AAM52484.1| 735|Homo sapiens winged-helix transcript... 27 8.3
AL833921-1|CAD38777.1| 480|Homo sapiens hypothetical protein pr... 27 8.3
AK074913-1|BAC11288.1| 592|Homo sapiens protein ( Homo sapiens ... 27 8.3
AF332192-1|AAK17191.1| 641|Homo sapiens transcription factor NY... 27 8.3
AB195785-1|BAE48238.1| 370|Homo sapiens regulatory factor X4 is... 27 8.3
AB195784-1|BAE48237.1| 390|Homo sapiens regulatory factor X4 is... 27 8.3
AB095366-1|BAE48232.1| 735|Homo sapiens regulatory factor X4, i... 27 8.3
AB095365-1|BAE48231.1| 744|Homo sapiens regulatory factor X4, i... 27 8.3
>BC025724-1|AAH25724.1| 316|Homo sapiens retinol dehydrogenase 12
(all-trans/9-cis/11-cis) protein.
Length = 316
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = -1
Query: 149 ILRAMSVTLVLLRISAFLIRSRSETPSIALHCPLSFLTRPIVSDYVSSC 3
++R S+ +L R+ + +++ E +LHC L+ P+ Y S C
Sbjct: 237 LVRHSSLLCLLWRLFSPFVKTAREGAQTSLHCALAEGLEPLSGKYFSDC 285
>AK054835-1|BAB70811.1| 316|Homo sapiens (ARSDR1) mRNA. protein.
Length = 316
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = -1
Query: 149 ILRAMSVTLVLLRISAFLIRSRSETPSIALHCPLSFLTRPIVSDYVSSC 3
++R S+ +L R+ + +++ E +LHC L+ P+ Y S C
Sbjct: 237 LVRHSSLLCLLWRLFSPFVKTAREGAQTSLHCALAEGLEPLSGKYFSDC 285
>Z83820-2|CAI42458.1| 263|Homo sapiens apolipoprotein O-like
protein.
Length = 263
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = -3
Query: 123 GSSADLRIPDSITQ*NSKHSPPLPFELSY*AHCK 22
GSS+++ +P T KHS PLP ELS A K
Sbjct: 197 GSSSEIEVPAKTTH-VLKHSVPLPTELSSEAKTK 229
>BC107096-1|AAI07097.1| 268|Homo sapiens apolipoprotein O-like
protein.
Length = 268
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = -3
Query: 123 GSSADLRIPDSITQ*NSKHSPPLPFELSY*AHCK 22
GSS+++ +P T KHS PLP ELS A K
Sbjct: 202 GSSSEIEVPAKTTH-VLKHSVPLPTELSSEAKTK 234
>AY358193-1|AAQ88560.1| 268|Homo sapiens AAIR8193 protein.
Length = 268
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = -3
Query: 123 GSSADLRIPDSITQ*NSKHSPPLPFELSY*AHCK 22
GSS+++ +P T KHS PLP ELS A K
Sbjct: 202 GSSSEIEVPAKTTH-VLKHSVPLPTELSSEAKTK 234
>U34806-1|AAC50826.1| 360|Homo sapiens G protein-coupled receptor
protein.
Length = 360
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = -1
Query: 161 LSLPILRAMSVTLVLLRISAFLIRSRSETPSIALHCPLSFLTRPIVSDYVS 9
++LP+ +L L R +FL + S S+ +HC + LT V Y++
Sbjct: 84 VTLPLWVDKEASLGLWRTGSFLCKGSSYMISVNMHCSVLLLTCMSVDRYLA 134
>BC101781-1|AAI01782.1| 360|Homo sapiens G protein-coupled receptor
15 protein.
Length = 360
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = -1
Query: 161 LSLPILRAMSVTLVLLRISAFLIRSRSETPSIALHCPLSFLTRPIVSDYVS 9
++LP+ +L L R +FL + S S+ +HC + LT V Y++
Sbjct: 84 VTLPLWVDKEASLGLWRTGSFLCKGSSYMISVNMHCSVLLLTCMSVDRYLA 134
>BC101779-1|AAI01780.1| 360|Homo sapiens G protein-coupled receptor
15 protein.
Length = 360
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = -1
Query: 161 LSLPILRAMSVTLVLLRISAFLIRSRSETPSIALHCPLSFLTRPIVSDYVS 9
++LP+ +L L R +FL + S S+ +HC + LT V Y++
Sbjct: 84 VTLPLWVDKEASLGLWRTGSFLCKGSSYMISVNMHCSVLLLTCMSVDRYLA 134
>BC069437-1|AAH69437.1| 360|Homo sapiens G protein-coupled receptor
15 protein.
Length = 360
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = -1
Query: 161 LSLPILRAMSVTLVLLRISAFLIRSRSETPSIALHCPLSFLTRPIVSDYVS 9
++LP+ +L L R +FL + S S+ +HC + LT V Y++
Sbjct: 84 VTLPLWVDKEASLGLWRTGSFLCKGSSYMISVNMHCSVLLLTCMSVDRYLA 134
>X52997-1|CAA37186.1| 177|Homo sapiens protein ( Human mRNA for
platelet glycoprotein IX. ).
Length = 177
Score = 27.5 bits (58), Expect = 8.3
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = -1
Query: 179 SPAHCHLSLPILRAMSVTLVLLRISAFLIRSRSETPSIALHCPLSFLT 36
+P HC SL LR R L++ R +PS+A H PL LT
Sbjct: 85 NPWHCDCSLTYLRLWLED----RTPEALLQVRCASPSLAAHGPLGRLT 128
>M80478-1|AAB40042.1| 177|Homo sapiens platelet glycoprotein IX
precursor protein.
Length = 177
Score = 27.5 bits (58), Expect = 8.3
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = -1
Query: 179 SPAHCHLSLPILRAMSVTLVLLRISAFLIRSRSETPSIALHCPLSFLT 36
+P HC SL LR R L++ R +PS+A H PL LT
Sbjct: 85 NPWHCDCSLTYLRLWLED----RTPEALLQVRCASPSLAAHGPLGRLT 128
>D88290-1|BAA13580.1| 84|Homo sapiens platelet glycoprotein IX
protein.
Length = 84
Score = 27.5 bits (58), Expect = 8.3
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = -1
Query: 179 SPAHCHLSLPILRAMSVTLVLLRISAFLIRSRSETPSIALHCPLSFLT 36
+P HC SL LR R L++ R +PS+A H PL LT
Sbjct: 28 NPWHCDCSLTYLRLWLED----RTPEALLQVRCASPSLAAHGPLGRLT 71
>BC030644-1|AAH30644.1| 641|Homo sapiens regulatory factor X, 4
(influences HLA class II expression) protein.
Length = 641
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = +3
Query: 54 AMEGYAWSFTA*SNQECGDPQKNQSNRHCPKN 149
AM+ Y WS T G P +N C +N
Sbjct: 452 AMQSYTWSLTYTVTTAAGSPAENSQQLPCMRN 483
>BC030229-1|AAH30229.1| 177|Homo sapiens glycoprotein IX (platelet)
protein.
Length = 177
Score = 27.5 bits (58), Expect = 8.3
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = -1
Query: 179 SPAHCHLSLPILRAMSVTLVLLRISAFLIRSRSETPSIALHCPLSFLT 36
+P HC SL LR R L++ R +PS+A H PL LT
Sbjct: 85 NPWHCDCSLTYLRLWLED----RTPEALLQVRCASPSLAAHGPLGRLT 128
>BC028582-1|AAH28582.1| 641|Homo sapiens regulatory factor X, 4
(influences HLA class II expression) protein.
Length = 641
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = +3
Query: 54 AMEGYAWSFTA*SNQECGDPQKNQSNRHCPKN 149
AM+ Y WS T G P +N C +N
Sbjct: 452 AMQSYTWSLTYTVTTAAGSPAENSQQLPCMRN 483
>AY102009-1|AAM52484.1| 735|Homo sapiens winged-helix transcription
factor RFX4 variant 3 protein.
Length = 735
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = +3
Query: 54 AMEGYAWSFTA*SNQECGDPQKNQSNRHCPKN 149
AM+ Y WS T G P +N C +N
Sbjct: 546 AMQSYTWSLTYTVTTAAGSPAENSQQLPCMRN 577
>AL833921-1|CAD38777.1| 480|Homo sapiens hypothetical protein
protein.
Length = 480
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = +3
Query: 54 AMEGYAWSFTA*SNQECGDPQKNQSNRHCPKN 149
AM+ Y WS T G P +N C +N
Sbjct: 291 AMQSYTWSLTYTVTTAAGSPAENSQQLPCMRN 322
>AK074913-1|BAC11288.1| 592|Homo sapiens protein ( Homo sapiens
cDNA FLJ90432 fis, clone NT2RP3000677, weakly similar to
DNA BINDING PROTEIN RFX2. ).
Length = 592
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = +3
Query: 54 AMEGYAWSFTA*SNQECGDPQKNQSNRHCPKN 149
AM+ Y WS T G P +N C +N
Sbjct: 403 AMQSYTWSLTYTVTTAAGSPAENSQQLPCMRN 434
>AF332192-1|AAK17191.1| 641|Homo sapiens transcription factor
NYD-sp10 protein.
Length = 641
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = +3
Query: 54 AMEGYAWSFTA*SNQECGDPQKNQSNRHCPKN 149
AM+ Y WS T G P +N C +N
Sbjct: 452 AMQAYTWSLTYTVTTAAGSPAENSQQLPCMRN 483
>AB195785-1|BAE48238.1| 370|Homo sapiens regulatory factor X4
isoform F protein.
Length = 370
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = +3
Query: 54 AMEGYAWSFTA*SNQECGDPQKNQSNRHCPKN 149
AM+ Y WS T G P +N C +N
Sbjct: 181 AMQAYTWSLTYTVTTAAGSPAENSQQLPCMRN 212
>AB195784-1|BAE48237.1| 390|Homo sapiens regulatory factor X4
isoform E protein.
Length = 390
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = +3
Query: 54 AMEGYAWSFTA*SNQECGDPQKNQSNRHCPKN 149
AM+ Y WS T G P +N C +N
Sbjct: 201 AMQAYTWSLTYTVTTAAGSPAENSQQLPCMRN 232
>AB095366-1|BAE48232.1| 735|Homo sapiens regulatory factor X4,
isoform d protein.
Length = 735
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = +3
Query: 54 AMEGYAWSFTA*SNQECGDPQKNQSNRHCPKN 149
AM+ Y WS T G P +N C +N
Sbjct: 546 AMQSYTWSLTYTVTTAAGSPAENSQQLPCMRN 577
>AB095365-1|BAE48231.1| 744|Homo sapiens regulatory factor X4,
isoform c protein.
Length = 744
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = +3
Query: 54 AMEGYAWSFTA*SNQECGDPQKNQSNRHCPKN 149
AM+ Y WS T G P +N C +N
Sbjct: 555 AMQAYTWSLTYTVTTAAGSPAENSQQLPCMRN 586
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,845,338
Number of Sequences: 237096
Number of extensions: 751326
Number of successful extensions: 1332
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1332
length of database: 76,859,062
effective HSP length: 60
effective length of database: 62,633,302
effective search space used: 1377932644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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