Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_M05
(248 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC103567-9|AAL35735.1| 204|Caenorhabditis elegans Hypothetical ... 31 0.082
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 29 0.44
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 29 0.44
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 29 0.44
AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical ... 29 0.44
CU457743-1|CAM36364.1| 692|Caenorhabditis elegans Hypothetical ... 28 1.0
U50191-7|AAK31555.2| 454|Caenorhabditis elegans Hypothetical pr... 27 2.3
AF163019-1|AAD49324.1| 1312|Caenorhabditis elegans trithorax-rel... 27 2.3
AF039718-1|AAB96746.1| 1312|Caenorhabditis elegans Abnormal cell... 27 2.3
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 26 3.1
U64849-7|AAC48048.1| 307|Caenorhabditis elegans Hypothetical pr... 26 3.1
AF063007-5|AAD47125.1| 712|Caenorhabditis elegans Prion-like-(q... 25 5.4
U28941-5|AAM98026.2| 989|Caenorhabditis elegans Hypothetical pr... 25 7.1
AY314775-1|AAQ84882.1| 971|Caenorhabditis elegans methuselah-li... 25 7.1
Z81576-5|CAB04646.2| 1696|Caenorhabditis elegans Hypothetical pr... 25 9.4
Z71263-7|CAH10797.1| 126|Caenorhabditis elegans Hypothetical pr... 25 9.4
Z71263-6|CAA95821.1| 137|Caenorhabditis elegans Hypothetical pr... 25 9.4
Z32679-8|CAM33498.1| 119|Caenorhabditis elegans Hypothetical pr... 25 9.4
U61950-7|AAL02467.1| 395|Caenorhabditis elegans Nuclear hormone... 25 9.4
U61950-6|AAC24291.1| 528|Caenorhabditis elegans Nuclear hormone... 25 9.4
U61950-5|AAL02466.1| 576|Caenorhabditis elegans Nuclear hormone... 25 9.4
AF273791-1|AAG15139.1| 525|Caenorhabditis elegans nuclear recep... 25 9.4
AF273790-1|AAG15138.1| 534|Caenorhabditis elegans nuclear recep... 25 9.4
AF273789-1|AAG15137.1| 333|Caenorhabditis elegans nuclear recep... 25 9.4
AF273787-1|AAG15135.1| 527|Caenorhabditis elegans nuclear recep... 25 9.4
AF025464-7|AAB71018.1| 135|Caenorhabditis elegans Hypothetical ... 25 9.4
>AC103567-9|AAL35735.1| 204|Caenorhabditis elegans Hypothetical
protein Y51F10.8 protein.
Length = 204
Score = 31.5 bits (68), Expect = 0.082
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +1
Query: 121 TKVTDIARRIGKLKWQWAGEIASRHDARFFRKGLEWLPRTGK 246
+K+ D I K K WAG +A R D R+ +W PR K
Sbjct: 109 SKLRDPLIHIKKRKLGWAGHVARRTDGRWTTLMNDWCPRDEK 150
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 29.1 bits (62), Expect = 0.44
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +1
Query: 127 VTDIARRIGKLKWQWAGEIASRHDARFFRKGLEWLP 234
V D + K K WAG +A R D R+ EW P
Sbjct: 800 VRDPLNFVKKRKLGWAGHVARRKDGRWTTLMTEWRP 835
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 29.1 bits (62), Expect = 0.44
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +1
Query: 127 VTDIARRIGKLKWQWAGEIASRHDARFFRKGLEWLP 234
V D + K K WAG +A R D R+ EW P
Sbjct: 975 VRDPLNFVKKRKLGWAGHVARRKDGRWTTLMTEWRP 1010
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 29.1 bits (62), Expect = 0.44
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +1
Query: 127 VTDIARRIGKLKWQWAGEIASRHDARFFRKGLEWLP 234
V D + K K WAG +A R D R+ EW P
Sbjct: 714 VRDPLNFVKKRKLGWAGHVARRKDGRWTTLMTEWRP 749
>AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical
protein Y32G9A.9 protein.
Length = 417
Score = 29.1 bits (62), Expect = 0.44
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +1
Query: 127 VTDIARRIGKLKWQWAGEIASRHDARFFRKGLEWLP 234
V D + K K WAG +A R D R+ EW P
Sbjct: 326 VRDPLNFVKKRKLGWAGHVARRKDGRWTTLMTEWRP 361
>CU457743-1|CAM36364.1| 692|Caenorhabditis elegans Hypothetical
protein K09E10.1 protein.
Length = 692
Score = 27.9 bits (59), Expect = 1.0
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -3
Query: 222 ETLSEKTGVVSASNLPSPLPLKFTNSSGNVGYFGSS 115
ET+ E+ V + N PS KF N N+ FG+S
Sbjct: 446 ETMIERGCVKRSPNHPSWCDFKFLNGKFNIAIFGNS 481
>U50191-7|AAK31555.2| 454|Caenorhabditis elegans Hypothetical
protein T14B4.9 protein.
Length = 454
Score = 26.6 bits (56), Expect = 2.3
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 160 KWQWAGEIASRHDARFFRKGL 222
KW W+ EIA + ++F R G+
Sbjct: 343 KWSWSDEIARKCGSKFVRHGV 363
>AF163019-1|AAD49324.1| 1312|Caenorhabditis elegans
trithorax-related protein LIN-59 protein.
Length = 1312
Score = 26.6 bits (56), Expect = 2.3
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 130 TDIARRIGKLKWQWAGEIASRHDAR 204
T IARR G+ ++AGE+ +R A+
Sbjct: 654 TKIARRAGEFLCEYAGEVITREQAQ 678
>AF039718-1|AAB96746.1| 1312|Caenorhabditis elegans Abnormal cell
lineage protein 59 protein.
Length = 1312
Score = 26.6 bits (56), Expect = 2.3
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 130 TDIARRIGKLKWQWAGEIASRHDAR 204
T IARR G+ ++AGE+ +R A+
Sbjct: 654 TKIARRAGEFLCEYAGEVITREQAQ 678
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
K06A9.1b protein.
Length = 2232
Score = 26.2 bits (55), Expect = 3.1
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -3
Query: 213 SEKTGVVSASNLPSPLPLKFTNSSGNVG 130
S TG+VS S +PS + SSG VG
Sbjct: 1670 SSTTGLVSTSTVPSSTGTMGSTSSGTVG 1697
>U64849-7|AAC48048.1| 307|Caenorhabditis elegans Hypothetical
protein K04A8.2 protein.
Length = 307
Score = 26.2 bits (55), Expect = 3.1
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 8/55 (14%)
Frame = -1
Query: 185 AISPAHCHLSLPILRAMSVTLVLLRI------SAFL--IRSRSETPSIALHCPLS 45
A +PA CH P+L A+ + +L I S +L ++SR PSI + P S
Sbjct: 12 AKTPAPCHSLFPVLIAIGILCFILTIITNTGNSKYLEKLKSRLRYPSIFVEVPNS 66
>AF063007-5|AAD47125.1| 712|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 59
protein.
Length = 712
Score = 25.4 bits (53), Expect = 5.4
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Frame = -3
Query: 228 PFETLSEKTGVVSAS-NLPSPLP-LKFTNSSGNVGYFGSSADLRIPDSITQ*NSKHSPPL 55
P + E+T + + NL S P L + S+ + Y SSA + D + +S PL
Sbjct: 414 PKQVEPERTSIPNGDYNLKSTSPPLSYGQSNRGLSYDTSSASYQPTDRMAPNKFNNSGPL 473
Query: 54 PFELSY*AH 28
P + S H
Sbjct: 474 PTQQSAQQH 482
>U28941-5|AAM98026.2| 989|Caenorhabditis elegans Hypothetical
protein F31D5.4 protein.
Length = 989
Score = 25.0 bits (52), Expect = 7.1
Identities = 18/66 (27%), Positives = 29/66 (43%)
Frame = -1
Query: 224 SRPFRKKRASCLLAISPAHCHLSLPILRAMSVTLVLLRISAFLIRSRSETPSIALHCPLS 45
+ P++ S + +SP SLP MS T V+ A + + SE L +S
Sbjct: 559 AEPYQMNATSQTVPLSPCARQTSLPPTPVMSAT-VMNNGVAVSVSATSEATMALLRFNIS 617
Query: 44 FLTRPI 27
L +P+
Sbjct: 618 TLMKPL 623
>AY314775-1|AAQ84882.1| 971|Caenorhabditis elegans methuselah-like
protein MTH-2 protein.
Length = 971
Score = 25.0 bits (52), Expect = 7.1
Identities = 18/66 (27%), Positives = 29/66 (43%)
Frame = -1
Query: 224 SRPFRKKRASCLLAISPAHCHLSLPILRAMSVTLVLLRISAFLIRSRSETPSIALHCPLS 45
+ P++ S + +SP SLP MS T V+ A + + SE L +S
Sbjct: 541 AEPYQMNATSQTVPLSPCARQTSLPPTPVMSAT-VMNNGVAVSVSATSEATMALLRFNIS 599
Query: 44 FLTRPI 27
L +P+
Sbjct: 600 TLMKPL 605
>Z81576-5|CAB04646.2| 1696|Caenorhabditis elegans Hypothetical
protein R10E8.6 protein.
Length = 1696
Score = 24.6 bits (51), Expect = 9.4
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = -1
Query: 101 FLIRSRSETPSIALH---CPLSFLTRPIVSDYVSS 6
F+ R PS +L C +SF P+++DY++S
Sbjct: 472 FMNRLNKTIPSNSLKADGCCISFNRHPLITDYITS 506
>Z71263-7|CAH10797.1| 126|Caenorhabditis elegans Hypothetical
protein F52A8.3b protein.
Length = 126
Score = 24.6 bits (51), Expect = 9.4
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = -3
Query: 195 VSASNLPSPLPLKFTNSSGNVGY 127
+ A + P P+P+ + N GN Y
Sbjct: 43 IIAQSAPVPIPVNYDNIPGNANY 65
>Z71263-6|CAA95821.1| 137|Caenorhabditis elegans Hypothetical
protein F52A8.3a protein.
Length = 137
Score = 24.6 bits (51), Expect = 9.4
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = -3
Query: 195 VSASNLPSPLPLKFTNSSGNVGY 127
+ A + P P+P+ + N GN Y
Sbjct: 54 IIAQSAPVPIPVNYDNIPGNANY 76
>Z32679-8|CAM33498.1| 119|Caenorhabditis elegans Hypothetical
protein C05B5.11 protein.
Length = 119
Score = 24.6 bits (51), Expect = 9.4
Identities = 6/17 (35%), Positives = 14/17 (82%)
Frame = +2
Query: 53 GNGGLCLEFHCVIESGM 103
GN G+C++ C++++G+
Sbjct: 48 GNKGICVDGECLVDNGL 64
>U61950-7|AAL02467.1| 395|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 46, isoform c protein.
Length = 395
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 219 TLSEKTGVVSASNLPSPLPLKFTNSSGN 136
T++ T S S+ P P++ TNSSG+
Sbjct: 80 TIAPSTSTGSFSSGSQPAPIESTNSSGS 107
>U61950-6|AAC24291.1| 528|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 46, isoform a protein.
Length = 528
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 219 TLSEKTGVVSASNLPSPLPLKFTNSSGN 136
T++ T S S+ P P++ TNSSG+
Sbjct: 213 TIAPSTSTGSFSSGSQPAPIESTNSSGS 240
>U61950-5|AAL02466.1| 576|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 46, isoform b protein.
Length = 576
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 219 TLSEKTGVVSASNLPSPLPLKFTNSSGN 136
T++ T S S+ P P++ TNSSG+
Sbjct: 261 TIAPSTSTGSFSSGSQPAPIESTNSSGS 288
>AF273791-1|AAG15139.1| 525|Caenorhabditis elegans nuclear receptor
NHR-46 protein.
Length = 525
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 219 TLSEKTGVVSASNLPSPLPLKFTNSSGN 136
T++ T S S+ P P++ TNSSG+
Sbjct: 210 TIAPSTSTGSFSSGSQPAPIESTNSSGS 237
>AF273790-1|AAG15138.1| 534|Caenorhabditis elegans nuclear receptor
NHR-46 protein.
Length = 534
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 219 TLSEKTGVVSASNLPSPLPLKFTNSSGN 136
T++ T S S+ P P++ TNSSG+
Sbjct: 219 TIAPSTSTGSFSSGSQPAPIESTNSSGS 246
>AF273789-1|AAG15137.1| 333|Caenorhabditis elegans nuclear receptor
NHR-46 protein.
Length = 333
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 219 TLSEKTGVVSASNLPSPLPLKFTNSSGN 136
T++ T S S+ P P++ TNSSG+
Sbjct: 18 TIAPSTSTGSFSSGSQPAPIESTNSSGS 45
>AF273787-1|AAG15135.1| 527|Caenorhabditis elegans nuclear receptor
NHR-46 protein.
Length = 527
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 219 TLSEKTGVVSASNLPSPLPLKFTNSSGN 136
T++ T S S+ P P++ TNSSG+
Sbjct: 212 TIAPSTSTGSFSSGSQPAPIESTNSSGS 239
>AF025464-7|AAB71018.1| 135|Caenorhabditis elegans Hypothetical
protein F53G2.8 protein.
Length = 135
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = -3
Query: 162 LKFTNSSGNVGYFGSSADLRIPDSITQ*NSKHSPPLPFEL 43
L +NSS +GS+ + P ++ Q H+ L F++
Sbjct: 79 LSLSNSSSPQNGYGSAKSTQTPSTVPQNTRSHAECLVFQI 118
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,783,242
Number of Sequences: 27780
Number of extensions: 101843
Number of successful extensions: 282
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 282
length of database: 12,740,198
effective HSP length: 62
effective length of database: 11,017,838
effective search space used: 220356760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -